A Chiral LC-MS Strategy for Stereochemical Assignment of Natural Products Sharing a 3-Methylpent-4-en-2-ol Moiety in Their Terminal Structures

Submitting author affiliation:
Nihon University, Fujisawa, Japan

Beilstein Arch. 2025, 202541. https://doi.org/10.3762/bxiv.2025.41.v1

Published 25 Jun 2025

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Abstract

A terminal 3-methylpent-4-en-2-ol (MPO) moiety is a common structural feature in various polyketide natural products. Stereochemical assignments of this moiety have mainly relied on computational analyses of NMR, ECD, and specific rotation data. However, neither of these approaches can be applied to all compounds. In this study, we developed an accurate and sensitive method to determine the absolute configuration of the terminal MPO moiety by a combination of chemical degradation, chemical synthesis, and chiral LC-MS analysis. The applicability of this method was demonstrated through the stereochemical assignment of capsulactone (1).

Keywords: a terminal 3-methylpent-4-en-2-ol (MPO) moiety; p-nitrobenzoyl (PNB) ester; methyl-3-hydroxy-2-methylbutanoate; chemical degradation; chiral LC-MS analysis

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When a peer-reviewed version of this preprint is available, this information will be updated in the information box above. If no peer-reviewed version is available, please cite this preprint using the following information:

Suo, R.; Irie, R.; Nakayama, H.; Ishimaru, Y.; Akama, Y.; Oikawa, M.; Itoi, S. Beilstein Arch. 2025, 202541. doi:10.3762/bxiv.2025.41.v1

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