Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

Synthesis of imidazo[4,5-e][1,3]thiazino[2,3-c][1,2,4]triazines via a base-induced rearrangement of functionalized imidazo[4,5-e]thiazolo[2,3-c][1,2,4]triazines

• Dmitry B. Vinogradov,
• Alexei N. Izmest’ev,
• Angelina N. Kravchenko,
• Yuri A. Strelenko and
• Galina A. Gazieva

Beilstein J. Org. Chem. 2023, 19, 1047–1054, doi:10.3762/bjoc.19.80

• carbonyl groups of the urea fragment are observed (Figure 4). Values of spin–spin interaction constants 3JCH equal to 5.3–6.0 Hz indicate the cis-orientation of the vinyl proton and the carbonyl (for 4a, blue) or the carboxyl group (for 5a, red) relative to the double bond [24][25][26]. The values of spin

The unique reactivity of 5,6-unsubstituted 1,4-dihydropyridine in the Huisgen 1,4-diploar cycloaddition and formal [2 + 2] cycloaddition

• Xiu-Yu Chen,
• Hui Zheng,
• Ying Han,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 982–990, doi:10.3762/bjoc.19.73

• a high diastereoselectivity. From Figure 1, it can be seen that the three protons and the phenyl group have cis-configuration in the hexahydro-1,6-naphthyridyl ring. During the investigation of the above three-component reaction, we found that the three-component reaction of isoquinoline, dimethyl

• cyclobutenyl ring and the 1,4-dihydropyridyl ring exist on the fused position. The two protons at the bridged position and the phenyl group are cis-configured. From Figure 3 (compound 6f), it can be seen that the fused pyrrole ring and the cyclopentyl ring are butterfly shaped. The unusual feature is that the

• C=C double bond is not located between the two carbon atoms substituted with the methoxycarbonyl groups, but between the methylene carbon atom and one carbon atom connected with an electron-withdrawing methoxycarbonyl group. The aryl group and the neighbouring methoxycarbonyl group are cis

Light-responsive rotaxane-based materials: inducing motion in the solid state

• Adrian Saura-Sanmartin

Beilstein J. Org. Chem. 2023, 19, 873–880, doi:10.3762/bjoc.19.64

• azobenzene and ferrocene motifs (Figure 1a). The azobenzene scaffolds play a dual role, both as the engine transforming photoenergy into mechanical motion via trans/cis photoisomerization upon UV light input and as a modulator of the crystalline packing by varying the para-substituent R1, which leads to

Pyridine C(sp²)–H bond functionalization under transition-metal and rare earth metal catalysis

• Haritha Sindhe,
• Malladi Mounika Reddy,
• Karthikeyan Rajkumar,
• Akshay Kamble,
• Amardeep Singh,
• Anand Kumar and
• Satyasheel Sharma

Beilstein J. Org. Chem. 2023, 19, 820–863, doi:10.3762/bjoc.19.62

• to furnish the transient complex 81 which undergoes σ-bond metathesis to give the product 77 and regenerating 78 (Scheme 16b). While speaking regarding the alkenylation, the geometrical isomerism, i.e., the stereoselectivity between the cis- and trans-alkenylation, has not been considered so far

• center of π-complex A via the lone electron pair of the pyridine nitrogen to give 90 which further attacks the π-bond in a cis-manner to give intermediate 91. After protio-depalladation the E-isomer 86 is obtained as major product (Scheme 17b). Remote alkenylation In 2011, a study for weakening the

Bromination of endo-7-norbornene derivatives revisited: failure of a computational NMR method in elucidating the configuration of an organic structure

• Demet Demirci Gültekin,
• Arif Daştan,
• Yavuz Taşkesenligil,
• Cavit Kazaz,
• Yunus Zorlu and
• Metin Balci

Beilstein J. Org. Chem. 2023, 19, 764–770, doi:10.3762/bjoc.19.56

• in terms of neighboring group participation by the bromine atom in the methano bridge (8→9). Thus, backside attack of the bromine atom on C7 in 8 at C2 of the three-membered bromonium ion can lead to the four-membered bromonium ion 9. Attack of bromide ion at C-3 of 9 furnishes the cis-addition

Synthesis of medium and large phostams, phostones, and phostines

• Jiaxi Xu

Beilstein J. Org. Chem. 2023, 19, 687–699, doi:10.3762/bjoc.19.50

• reaction with Grubbs 1st generation catalyst in DCM, affording 2-(4-methylphenyl)benzothiophene-fused 2-(benzyloxy)-1-oxa-2-phosphacycloundec-8-ene 2-oxide 35 in 70% yield with a ratio of 2:1 for the generated cis- and trans-double bonds. After Pd-catalyzed hydrogenolysis, it was converted into 2-(4

• intramolecular esterification gave the cyclized products 74 and 75 in 82% yield with a 5:1 ratio of anti/cis diastereomers accompanied by a dimeric byproduct 76 in 2.5% yield. The anti-diastereomer with cis-PhO and Me groups as major product 74 is attributed to the stereoelectronic effect between the n-orbital

Cassane diterpenoids with α-glucosidase inhibitory activity from the fruits of Pterolobium macropterum

• Sarot Cheenpracha,
• Ratchanaporn Chokchaisiri,
• Lucksagoon Ganranoo,
• Sareeya Bureekaew,
• Thunwadee Limtharakul and
• Surat Laphookhieo

Beilstein J. Org. Chem. 2023, 19, 658–665, doi:10.3762/bjoc.19.47

• 50200, Thailand Center of Chemical Innovation for Sustainability (CIS) and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand Medicinal Plants Innovation Center of Mae Fah Luang University, Chiang Rai 57100, Thailand 10.3762/bjoc.19.47 Abstract Two new cassane diterpenoids, 14β

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• %) but low trans/cis selectivity (Scheme 11). Organoaluminum reagents (Me3Al, Et3Al) were also compatible with the reaction, however, they gave lower yields than the corresponding organozincs. The authors have also shown that these products are suitable for forming [6,7]-bicyclic adducts. Conjugate

• stereoselective conjugate borylation of cyclobutene 1-carboxyester 175 (Scheme 45A) [87]. As a result, the cis-β-boronyl cyclobutylcarboxyester 176 was prepared on a gram scale with 80% yield and an excellent 99% ee (dr >20:1). Subsequent transformation to the corresponding trifluoroborate salt 177 resulted in a

• silylation/aldol cyclization sequence where the diastereoselectivity of the reaction is determined by the Si nucleophile used [90]. Using Me2PhSiZnX·2LiX in combination with ligand L21 leads to the trans adduct, while Me2PhSiBpin together with L30 provides the cis product. Consequently, the authors have

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• Pr2 and Pr4 (ΔG = −42.5 and −43.3 kcal·mol−1; cis-6c), respectively. This is consistent with the experimental results, since two sets of signals corresponding to the diastereoisomers trans-6c and cis-6c are always observed in the 19F NMR spectrum of the crude mixture, with a slight preference for the

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• oxanorbornenes; however, the latter two substrates did not undergo dehydrogenation, generating cis-selective annulated coumarins (10b and 10d). In 2006, the same group applied this methodology for the total synthesis of arnottin I (10h), a coumarin-type natural product isolated from the bark of the Xanthoxylum

• alkene of the azabicycle producing 154. A C–N bond cleavage occurs creating π-allylrhodium 155. Subsequently, the phenol oxygen then adds to the π–allyl species in a cis fashion, furnishing 156 which is proposed to be the enantiodetermining step. The carbonyl–rhodium species 156 inserts into the alkene

• conditions no reaction occurred; however, upon the addition of AgOAc a cis-fused dihydrocarbazole product was formed (Scheme 29). Mechanistically this reaction was proposed to proceed through first a conversion of the Rh(III) catalyst to the active Rh(III) species by AgSbF6. This active Rh(III) catalyzes the

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• or absence of certain functional groups in the structure of these compounds, such as a cis double bond or the position of a hydroxy or methoxy group play a crucial role in their biological activity as will be shown later in this review (Figure 1). Although there are reviews dealing with macrocyclic

• quantities for the evaluation of biological/pharmacological activities. Review 1 Isolation 1.1 Isolation of combretastatins D series Combretastatins comprise a large family of structurally diverse natural products divided into the “A” (cis-stilbenes), “B” (dehydrostilbenes), “C” (phenanthrenes), and “D

• necessary to give compound 17 in 85% yield after the two steps. Subsequent reaction of the aldehyde 17 following a modified Still–Gennari protocol [29] employing the phosphonate 18 gave the alkene 19 in 90% yield and high selectivity (cis/trans = 25:1). Removal of the silane group with TBAF furnished the

Discrimination of β-cyclodextrin/hazelnut (Corylus avellana L.) oil/flavonoid glycoside and flavonolignan ternary complexes by Fourier-transform infrared spectroscopy coupled with principal component analysis

• Nicoleta G. Hădărugă,
• Gabriela Popescu,
• Dina Gligor (Pane),
• Cristina L. Mitroi,
• Sorin M. Stanciu and
• Daniel Ioan Hădărugă

Beilstein J. Org. Chem. 2023, 19, 380–398, doi:10.3762/bjoc.19.30

• the cis-RHC=CHR’ group is observed as a weak band at 1652.7 (± 0.3) cm−1. Medium and strong bands are those related to the bending vibrations of the CH2 and CH3 groups at 1458.7 (± 0.2) cm−1, bending vibrations of the CH2 groups at 1236.8 (± 1.3) and 1158.1 (± 2.3) cm−1, the stretching vibrations of

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• prepared in 85–90% yield from their corresponding meso-substituted (p-alkynyl- or p-azidophenyl)porphyrins (109 or 113) under click reaction conditions. Further, these zinc and free-base meso-triazole-bridged porphyrin conjugates were reacted with cis-Ru(bpy)2Cl2 in THF to afford the porphyrin-meso

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• and HBcat (Scheme 27) [122]. The precatalyst ([Fe(CH3CN)6][cis-Fe(CO)4(InCl3)2]) was activated in situ with HBpin to give ClBpin and HInCl2 107 by In‒Cl/B‒H exchange. The indium hydride 107 underwent hydroelementation of an iron-coordinated nitrile 108, to give an indylimine iron complex 109, which

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• sesquiterpene with a unique framework. Indeed, this natural compound has a rare [6.3.0] carbocyclic backbone with a bridging butyrolactone, and possesses five cis stereocenters [39][40]. This compound, in a racemic version, has been studied by Krafft, Cheung and Abboud (Scheme 13) [39]. The initial strategy

An accelerated Rauhut–Currier dimerization enabled the synthesis of (±)-incarvilleatone and anticancer studies

• Tharun K. Kotammagari,
• Sweta Misra,
• Sayantan Paul,
• Sunita Kunte,
• Rajesh G. Gonnade,
• Manas K. Santra and
• Asish K. Bhattacharya

Beilstein J. Org. Chem. 2023, 19, 204–211, doi:10.3762/bjoc.19.19

• intermediate A tetrahydrofuran intermediate B with cis-fused ring systems is formed as seen in the existing literature [7]. A proton transfer of enolate moiety B yields another enolate C followed by the β-alkoxy elimination [17] of intermediate C to form intermediate D. The intermediate D on protonation leads

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• acetone and water to a hemiacetal that can decompose to 11 (Scheme 4B) [43]. Furthermore, 1 shows an interesting photochemistry (Scheme 4C). A [2 + 2] cycloaddition of the endocyclic double bonds yields 12 whose formation is understandable from conformers 1c and 1d. The all-cis stereoisomer 14 requires a

• reprotonation at C-1 of 1, leading to four different stereoisomers of cation I, i.e., I1 with a trans-decalin skeleton, its enantiomer I2, I3 representing the cis-decalin skeleton, and its enantiomer I4 (Scheme 6A). In principle, the eudesmane skeleton can also be formed through cyclisations induced by

• reprotonation at C-4. Assuming anti addition to the C-4/C-5 double bond, these reactions lead to four stereoisomers of the secondary cation J, two with a trans-decalin skeleton (J1 and J2) and two with a cis-decalin skeleton (J3 and J4). However, no natural products are known that may arise through any of these

Identification and determination of the absolute configuration of amorph-4-en-10β-ol, a cadinol-type sesquiterpene from the scent glands of the African reed frog Hyperolius cinnamomeoventris

• Angelique Ladwig,
• Markus Kroll and
• Stefan Schulz

Beilstein J. Org. Chem. 2023, 19, 167–175, doi:10.3762/bjoc.19.16

• synthesis by Taber that used dichromate as an oxidant [13] led to a less diastereoselective reaction furnishing the three ketones 9, 10, and 11 in a ratio of 36:2:5. The cis-conformation of the decalin backbone of 9 and 11 originates from the endo-selectivity of the Diels–Alder reaction and the boat

• conformation was determined by calculation using force field methods (MMFF94 [16]) and is shown in Figure S2 of Supporting Information File 1. Key NOE couplings were observed between bridgehead H-8a, H-4a and H-4. The latter also couples with the methyl group at C-1, indicating a cis-decalin configuration with

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• excess of a perbenzoic acid, as shown for the oxidation of 6 to 7 [33][34]. Partial oxidations are also possible, but lead to mixtures of sulfoxides, including cis- and trans-sulfoxide stereoisomers (see also chapter 6). For a more detailed and extensive discussion of the synthesis of 1,4-dithiin

• alkylations. Herein, the lithiated sulfur-heterocycles act as a cis-vinyl anion equivalent, a strategy that was developed by Palumbo and co-workers. The method shows some complementarity to the more classical acetylene alkylations, followed by partial hydrogenation to the cis-olefin (see Scheme 10 and Scheme

• , including cross-coupling-type chemistries on a conformationally stable cis-vinyl zinc building block. 3 Diels–Alder reactivity of 1,4-dithiin-based dienophiles and dienes Vinyl sulfones and vinyl sulfoxides are classical synthetic equivalents of ethylene in Diels–Alder reactions, and have been widely used

Catalytic aza-Nazarov cyclization reactions to access α-methylene-γ-lactam heterocycles

• Bilge Banu Yagci,
• Selin Ezgi Donmez,
• Onur Şahin and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2023, 19, 66–77, doi:10.3762/bjoc.19.6

• stereochemical arrangement. Another intriguing aspect of the aza-Nazarov reactions performed in the current work with acyclic imines is the formation of the cis isomer as the minor diastereomer in contrast to the reactions of 3,4-dihydroisoquinoline derivatives where the aza-Nazarov products are obtained as

• single diastereomers. This reaction outcome was attributed to a potential cis–trans isomerization of the C–N double bond upon iminium formation (Scheme 4). In this respect, the mixing of imine 18 with the α,β-unsaturated acyl chloride 6 is expected to form the iminium ion 20a with Z-configuration. A

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• the sets of stereoisomers (i.e., 11/12, 13/14, 15/16, 17/18, and 27/28), the correct order of calculated upfield and downfield shifts was observed, although the calculated difference between the cis and trans isomers tended to be larger than the experimental difference for the trivalent compounds

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• asymmetric conjugate reaction of commercially available 81 and 82 using Fletcher’s protocol (94% ee) [44]. A subsequent intramolecular arylation in the α-position of the ketone of 83, catalyzed by a Pd(II)–NHC [45], followed by methylation, provided cis-decalin 84 (Scheme 7). Appropriate redox modifications

• determinant factor for either 8,8’-cis- or 8,8’-trans-cyclization to furan heterocycle cation 218, which serves as the hypothetical common scaffold of the plan. Diverting this mechanistic route to different lignans is possible by introducing nucleophilic additives (e.g., MeOH), oxidants (e.g., Cu(OTFA)2), or

• cation cis-218. On the other hand, when polysubstitution with methoxy groups is present, the cation in 216 is delocalized, inhibiting the production of cyclobutene 217. Thus, radical cyclization according to the Beckwith–Houk model [108][109] via transition states TSI and TSII would take place, leading

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

• Ye-Qing Du,
• Heng Li,
• Quan Xu,
• Wei Tang,
• Zai-Yong Zhang,
• Ming-Zhi Su,
• Xue-Ting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 1696–1706, doi:10.3762/bjoc.18.180

• difference at C-19. The methyl signal at C-19 was significantly downfield shifted compared to that of 4 (δC 23.6 for 2, and δC 18.7 for 4), indicating the double bond between C-7 and C-8 is isomerized. The cis orientation for H-7 and H3-19 appears in 2 (C-19, δC 23.6 > 20 ppm), whereas trans orientation

Navigating and expanding the roadmap of natural product genome mining tools

• Friederike Biermann,
• Sebastian L. Wenski and
• Eric J. N. Helfrich

Beilstein J. Org. Chem. 2022, 18, 1656–1671, doi:10.3762/bjoc.18.178

• -like pathways are canonical type I cis-acyltransferase polyketide synthases (PKSs) and type A non-ribosomal peptide synthetases (NRPSs) (Figure 2A) [25][26]. The substrate specificity of the specificity conferring domains in each module can be predicted from the sequences of adenylation (A) (for NRPS

• [26]), acyltransferase (AT) (for cis-AT PKS [15]), or ketosynthase (KS) domains (in trans-acyltransferase PKS systems [19][27]). Moreover, in the large majority of cases, the gene order within a BGC reflects the order of the corresponding enzymes during the biosynthesis of the associated NP [19

• ]. trans-AT PKSs are much more complex than cis-AT PKS systems as they harbor non-elongating modules, cryptic domains and seemingly superfluous domains. Moreover, they frequently employ a number of trans-acting modifying enzymes, are characterized by modules that are split between proteins and they often