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Search for "in situ" in Full Text gives 1171 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Site-specific labelling of native peptides and proteins: chemical and enzymatic strategies

  • Antonio Angelastro,
  • Jonathan Bargh,
  • Subhajit Guria,
  • Victor Laserna and
  • Louis Luk

Beilstein J. Org. Chem. 2026, 22, 857–881, doi:10.3762/bjoc.22.67

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  • a chemical label or crosslinking functionality (Scheme 3a). One of the earliest rebridging strategies employed bis-sulfone reagents 6 which, upon in situ activation, generate monosulfone Michael acceptors that selectively react with a reduced cysteine pair (Scheme 3b) [27]. This approach was later
  • , including IgG (trastuzumab) [56], EGFR [57], the adenosine A1 receptor [58] and P2X7 [59], have been labelled in vitro and/or in cellular systems. Catalytic approaches generate reactive species in situ, thus enhancing both selectivity and efficiency. A notable example involves rhodium (Rh)-based catalysis
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Published 03 Jun 2026

The trans-influence in gold chemistry from a catalytic perspective

  • Manfred Bochmann

Beilstein J. Org. Chem. 2026, 22, 838–856, doi:10.3762/bjoc.22.66

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  • electron-rich trialkylphosphines, increased the proportion of N-bonded thiocyanate [24]. More recently, Espinet and co-workers used solution microcalorimetry with in-situ generated HI to provide bond dissociation energy scales for the Au–C bonds in R–Au(PPh3) (R = Me, aryl or alkynyl), and further to
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Published 01 Jun 2026

Synthetic study of vic-bromination of diarylacetylenes, easy purification and separation

  • Akane Togo,
  • Hiyono Suzuki,
  • Yuto Akai,
  • Makoto Matsumoto,
  • Yoshinori Suzuma,
  • Hidehiko Kodama and
  • Kouichi Matsumoto

Beilstein J. Org. Chem. 2026, 22, 795–802, doi:10.3762/bjoc.22.61

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  • was reported for the Z isomer (Scheme 1b). As another example in 2008, Adimurthy and co-workers proposed the combination of NaBr-NaBrO3 in AcOH in order to prepare in-situ generated Br2, which was reacted with diphenylacetylene to give no selectivity between E and Z isomers of 1,2-dibromo-1,2
  • FeBr3 might be important and in situ Br2 might be generated and formed. FeBr3 might react with Br2 to form [FeBr4]− and "Br+", which can react with 1a. As for the reaction mechanism, the plausible pathway might be the following (Scheme 3). The reaction of NBS and FeBr3 might generate Br2 or "Br+", which
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Published 22 May 2026

Halogenated azobenzene acrylates: from efficient solution photoswitching to stable solid-state photochromic materials

  • Martina Vachtlová,
  • Michaela Fecková,
  • Vítězslav Zima,
  • Jan Podlesný,
  • Milan Klikar,
  • Oldřich Pytela,
  • Patrik Pařík,
  • Jakub Opršal,
  • Eliška Juhaňáková,
  • Veronika Chrtová and
  • Filip Bureš

Beilstein J. Org. Chem. 2026, 22, 782–794, doi:10.3762/bjoc.22.60

Graphical Abstract
  • salts prepared in situ from the commercially available aromatic amines 2a–f [25]. The reaction was buffered by a 10% aq solution of sodium hydroxide and afforded the azobenzenes 3a–f with yields ranging from 41 to 93%. These intermediates were further O-alkylated using 6-chlorohexanol in the presence of
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Published 21 May 2026

Preparation of 3-(alkylamino)imidazo[1,2-a]pyridine-2-carbaldehydes via Kornblum oxidation and unexpected ring-opening reactions of the corresponding alcohols under oxidative conditions

  • Sandile J. Mkhize,
  • Memory Zimuwandeyi,
  • Manuel A. Fernandes,
  • Amanda L. Rousseau and
  • Moira L. Bode

Beilstein J. Org. Chem. 2026, 22, 763–770, doi:10.3762/bjoc.22.58

Graphical Abstract
  • ), using conditions described by Gladysz et al. [24]. Reaction with glyoxylic acid as the aldehyde component has previously been reported to yield the 2-unsubstituted product as a result of in situ decarboxylation [25]. Unexpectedly, on product isolation we discovered that compounds 13a–d, the methyl
  • isocyanide, the glyoxylic acid had undergone in situ esterification in the presence of methanol and the acid catalyst. On scaling the reaction (≈2 g aminopyridine), the originally anticipated unsubstituted products 12a–d were prepared as the sole products in yields ranging from 31% to 57%. Once again, only
  • starting material was recovered from reaction of compound 9e. In order to prevent possible mixtures of the two products being formed with slight variation in reaction conditions, the reaction to prepare ester 13 was properly optimised to ensure that full in situ esterification of the glyoxylic acid had
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Published 19 May 2026

Rongalite addition to dienones: diastereoselectivity in cyclic sulfone synthesis; stereochemical rationalization and prospects as a general conjugate nucleophile

  • Melina Goga,
  • Hao Zong,
  • James Franco,
  • Jazmine Prana,
  • Rudolph Michel,
  • Antonia Muro,
  • Elana Rubin,
  • Janet Brenya,
  • Henk Eshuis and
  • Magnus W. P. Bebbington

Beilstein J. Org. Chem. 2026, 22, 742–752, doi:10.3762/bjoc.22.56

Graphical Abstract
  • sulfones 1a/1b in the same diastereomeric ratio (≈7:1) as observed earlier. This supports the idea that sulfinate addition is reversible. Adducts 1a and 1b most likely form from dibenzalacetone generated in situ. Therefore, prior elimination of p-toluenesulfinate to give dibenzalacetone, followed by
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Published 13 May 2026

Synthesis of heterocycles based on azomethine ylides from α-amino acids (or amines) and carbonyl compounds

  • Ekaterina V. Berezhnaya,
  • Alexander I. Ponyaev,
  • Vitali M. Boitsov and
  • Alexander V. Stepakov

Beilstein J. Org. Chem. 2026, 22, 705–741, doi:10.3762/bjoc.22.55

Graphical Abstract
  • acid or its ester (Scheme 1). In both cases, condensation of amino acids with carbonyl compounds occurs; however, in the first case, decarboxylation occurs with the in situ formation of azomethine ylides, which subsequently undergo cycloaddition to unsaturated substrates. The advantage of the first
  • high yields (77–98%) and good enantioselectivity (67–92% ee). The in situ-generated azomethine ylide is coordinated to the metal center and oriented in transition state A due to the spatial repulsion between the aryl or cyclohexyl group in the ylide and the cyclohexyl fragments of ligand L7, while its
  • -butylsulfinylimines 58 and iminoesters 12 using Ag2CO3 as a base (Scheme 27) [66]. Electrophilic dipolarophiles such as sulfinyl imines have been shown to readily undergo (3 + 2) cycloaddition reactions with azomethine ylides generated in situ from the corresponding imino esters, affording pyrrolidines 59 in high
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Published 13 May 2026

Hydrogen production from formic acid catalyzed by NHC–Cu complexes

  • Orlando Santoro and
  • Catherine S. J. Cazin

Beilstein J. Org. Chem. 2026, 22, 620–627, doi:10.3762/bjoc.22.48

Graphical Abstract
  • )] (1a) with formic acid provides the formato species [Cu{OC(O)H}(IPr)] (1b) [52][53]. It was hypothesized that the thermal decarboxylation of 1b would generate in situ a highly reactive hydride species. The reaction of the latter with formic acid would regenerate the formato complex and release H2
  • . Interestingly, by adding to the reaction mixture a further equivalent of FA, evolution of gas was observed and H2 was detected by NMR spectroscopy (see Supporting Information File 1, Figure S1). This highlighted the formation in situ of the Cu–H species by decarboxylation of 1b. To quantify the amount of gas
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Published 23 Apr 2026

Regioselective approach to 5-arylsulfonylisoxazoles and their antimicrobial activity

  • Artem S. Sazonov,
  • Dmitry A. Vasilenko,
  • Denis V. Porfiriev,
  • Yuri K. Grishin,
  • Rimma A. Gazzaeva,
  • Alisa P. Chernyshova,
  • Maxim A. Kryakvin,
  • Anna A. Baranova,
  • Vera A. Alferova and
  • Elena B. Averina

Beilstein J. Org. Chem. 2026, 22, 592–602, doi:10.3762/bjoc.22.45

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  • 5-sulfonylisoxazoles (Scheme 1, approaches A, B, C). As shown in Scheme 1, nitrile oxides are generated in situ by oxidation of aldoximes with chloramine T (approach A) or by dehydrohalogenation of the corresponding oxime halide under basic conditions (approaches B and C). Subsequently, the nitrile
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Published 17 Apr 2026

Kinetic resolution of racemic planar-chiral vinylcymantrenes by molybdenum-catalyzed asymmetric metathesis dimerization

  • Haruna Imazu,
  • Hitoshi Izu,
  • Yasuhiro Ohki and
  • Masamichi Ogasawara

Beilstein J. Org. Chem. 2026, 22, 568–574, doi:10.3762/bjoc.22.42

Graphical Abstract
  • benzene at the indicated temperature in the presence of an appropriate chiral Mo-precatalyst (10 mol %), which was generated in situ from the Mo-precursor, (pyrrolyl)2Mo(=CHCMe2Ph)(=N-C6H3-2,6-iPr2) [36], and an axially chiral biphenol ligand. The chiral Mo/(R)-L1 precatalyst [21] facilitated the
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Published 31 Mar 2026

Get a better glimpse on sequential photoreactions of trisnorbornadienes with 19F NMR spectroscopy

  • Julian Felix Maria Hebborn,
  • Ben Eric Merten,
  • Thomas Paululat and
  • Heiko Ihmels

Beilstein J. Org. Chem. 2026, 22, 527–534, doi:10.3762/bjoc.22.38

Graphical Abstract
  • trisquadricyclane. Even though the reaction can be monitored by photometry or by in situ 1H NMR spectroscopy, unambiguous assignment of the distinct intermediate mono- and bisquadricyclanes was not possible because of signal overlap. In contrast, this shortcoming is circumvented with in situ 19F NMR-spectroscopic
  • lines, 1H NMR spectroscopy is a very useful method to follow the photoreaction, ideally upon direct irradiation in the NMR probehead (in situ NMR), because it potentially enables accurate structure elucidation. But even though this method may enable the accurate monitoring of a stepwise photochromic
  • reaction of multichromophores in some cases [36][37], significant overlap of NMR signals often interferes with the detailed identification of separate components. Therefore, we proposed that the analysis of the photoreaction of a fluorinated starting material with in situ 19F NMR spectroscopy may add a
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Published 23 Mar 2026

Modern synthetic pathways towards eribulin and its subunits

  • Sebastian Dominik Graf

Beilstein J. Org. Chem. 2026, 22, 495–526, doi:10.3762/bjoc.22.37

Graphical Abstract
  • from Scheme 26 and Scheme 27 were coupled via Corey–Chaykovsky reaction and the so-obtained epoxide was treated with m-CPBA yielding sulfone 251 as the major diastereomer (Scheme 28). Regioselective deprotonation and epoxide opening with in situ-formed Ti(III)-species from Cp2TiCl2 and zinc led to the
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Published 19 Mar 2026

Cone p-aminocalix[4]arenes enriched with ‘clickable’ alkyne or azide functionalities

  • Ilia Korniltsev,
  • Vasily Bazhenov,
  • Alexander Gorbunov,
  • Dmitry Cheshkov,
  • Stanislav Bezzubov,
  • Vladimir Kovalev and
  • Ivan Vatsouro

Beilstein J. Org. Chem. 2026, 22, 399–415, doi:10.3762/bjoc.22.28

Graphical Abstract
  • commercially available lithium bis(trimethylsilyl)amide (LiHMDS), but the latter was found inconvenient for routine syntheses due to high moisture sensitivity which prevented reproducibility of the reaction conditions. To overcome this difficulty, the LiHMDS solution was instead prepared in situ by reacting
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Published 09 Mar 2026

Recent advances in the cleavage of non-activated amides

  • Eun-Sol Choi and
  • Hyo-Jun Lee

Beilstein J. Org. Chem. 2026, 22, 352–369, doi:10.3762/bjoc.22.23

Graphical Abstract
  • distinct mechanistic pathways, a simplified version of which is described herein. The active catalytic species, palladium(II) pivalate, is formed in situ from Pd(COD)Cl₂ through ligand exchange with pivalic acid (PivOH). Complexation of this active Pd(II) species with ligand L1 and the amide substrate
  • analogous to that proposed in Scheme 12. Halogenation In 2022, Szostak and Chen developed an elegant and highly chemoselective transamidation of non-activated tertiary amides via in-situ generation of an acyl iodide intermediate 121 (Scheme 19) [67]. In the presence of a catalytic amount of KI and one
  • . Bioactive molecule-derived amides with complex structures smoothly underwent acyl iodide generation, thereby furnishing the products 132, 133, and 134 in 85%, 82%, and 88% yield, respectively, via in-situ amidation with aniline. The scope of amine nucleophiles was broad as well. Anilines, primary amines
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Published 19 Feb 2026

Synthesis of tricyclic fused pyrrolidine nitroxides from 2-alkynylpyrrolidine-1-oxyls

  • Mark M. Gulman,
  • Yuliya F. Polienko,
  • Sofia Yu. Trakhininа,
  • Yuri V. Gatilov,
  • Tatyana V. Rybalova,
  • Sergey A. Dobrynin and
  • Igor A. Kirilyuk

Beilstein J. Org. Chem. 2026, 22, 344–351, doi:10.3762/bjoc.22.22

Graphical Abstract
  • corresponding alkynylmagnesium bromides to nitrone 1 [20]. Radicals 2d and 2e were prepared in analogy to the known procedure using trimethylsilylacetylene and benzyl propargyl ether as the terminal alkynes (Scheme 1). Nitrone 1 was treated with a 10-fold excess of alkynylmagnesium bromide prepared in situ via
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Published 19 Feb 2026

Spirobarbiturates with a pyrrolizidine moiety: synthesis, structure and biological evaluation

  • Arthur A. Puzyrkov,
  • Andrew S. Drachuk,
  • Ekaterina A. Popova,
  • Alexander V. Stepakov and
  • Vitali M. Boitsov

Beilstein J. Org. Chem. 2026, 22, 274–288, doi:10.3762/bjoc.22.20

Graphical Abstract
  • azabicyclo[3.1.0]hexane and cyclopropa[a]pyrrolizine moieties can be synthesized via 1,3-dipolar cycloaddition between cyclopropene derivatives and azomethine ylides generated in situ from alloxan and α-amino acids [43]. In [43], a mechanism was proposed for the formation of azomethine ylides from alloxan
  • [a]pyrolizines as well as spiroazabicyclo[3.1.0]hexanes are readily available from cyclopropenes and azomethine ylides [47][48][49] and some adducts inhibited cancer cell growth in vitro [50][51]. The first reported synthesis of spirobarbiturates employing azomethine ylides (generated in situ from
  • ylide, which is generated in situ by condensation of alloxan and ʟ-proline, can react with maleimides to give spirobarbiturate-pyrrolo[3,4-a]pyrrolizidine-1,3-diones in moderate to good yields. We have demonstrated the possibility of using a wide range of N-substituted maleimides as dipolarophiles. All
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Published 17 Feb 2026

A mild and atom-efficient four-component cascade strategy for the construction of biologically relevant 4-hydroxyquinolin-2(1H)-one derivatives

  • Dmitrii A. Grishin,
  • Kseniia I. Sharkovskaia,
  • Ilya G. Kolmakov,
  • Daria A. Ipatova,
  • Rostislav A. Petrov,
  • Nikolai D. Dagaev,
  • Dmitry A. Skvortsov,
  • Maria G. Khrenova,
  • Valeriy V. Andreychev,
  • Sergei A. Evteev,
  • Yan A. Ivanenkov,
  • Roman L. Antipin,
  • Olga А. Dontsova and
  • Elena K. Beloglazkina

Beilstein J. Org. Chem. 2026, 22, 244–256, doi:10.3762/bjoc.22.18

Graphical Abstract
  • and selective synthesis of previously inaccessible 4-hydroxyquinolin-2(1H)-one derivatives. Utilizing readily available 6-halo-4-hydroxyquinolinones, aromatic aldehydes, Meldrum’s acid, and alcohols under ʟ-proline catalysis, the reaction proceeds via in situ formation of arylidene-substituted Meldrum
  • presumably proceed through in situ formation of the Michael acceptor from the condensation of an aromatic aldehyde with Meldrum’s acid, followed by decarboxylation and lactonization to yield the pyranoquinolinedione products (Scheme 1). We hypothesized that employing an alcohol as solvent could induce
  • the desired products. Employing in situ acyl chloride formation from acids 11a–c in the presence of a slight excess of cyclohexanol led to pyranoquinoline 14 formation instead of the open-chain ester. The same cyclic product 14 was obtained via Fischer–Speier esterification with a small excess of
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Published 09 Feb 2026

Circumventing Mukaiyama oxidation: selective S–O bond formation via sulfenamide–alcohol coupling

  • Guoling Huang,
  • Huarui Zhu,
  • Shuting Zhou,
  • Wanlin Zheng,
  • Fangpeng Liang,
  • Zhibo Zhao,
  • Yifei Chen and
  • Xunbo Lu

Beilstein J. Org. Chem. 2026, 22, 158–166, doi:10.3762/bjoc.22.9

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  • limitations, we envisioned that highly electrophilic sulfilimidoyl intermediates – generated in situ via N-halosuccinimide-mediated oxidative activation of sulfenamides – could be directly intercepted by alcohols under basic conditions to furnish structurally diverse sulfinimidate esters [32]. In particular
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Published 20 Jan 2026

Total synthesis of natural products based on hydrogenation of aromatic rings

  • Haoxiang Wu and
  • Xiangbing Qi

Beilstein J. Org. Chem. 2026, 22, 88–122, doi:10.3762/bjoc.22.4

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  • new stereocenters, producing architecturally complex 6–5 fused ring systems. The key points lie in the utility of a chiral homogeneous ruthenium-N-heterocyclic carbene complex, as well as an in-situ activated rhodium catalyst. In 2022, Bach and co-workers reported a modular approach for the highly
  • between 179 and the dicarbonyl compound, followed by in-situ oxidation of the resulting intermediate 180 to afford compound 181 in a one-pot sequence. At this step, the key challenge was to obtain (−)-finerenone with high enantioselectivity through asymmetric hydrogenation of intermediate 181 (Scheme 25
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Published 07 Jan 2026

Advances in Zr-mediated radical transformations and applications to total synthesis

  • Hiroshige Ogawa and
  • Hugh Nakamura

Beilstein J. Org. Chem. 2026, 22, 71–87, doi:10.3762/bjoc.22.3

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  • yields. The catalytic system was further extended to the borylation of alkyl chlorides. (Scheme 7B). Under XAT conditions with B2(cat)2, the in situ-generated alkyl radical was trapped by diborane compound to form intermediate 39, which was subsequently converted into pinacol boronate 40 upon treatment
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Published 05 Jan 2026

Reactivity umpolung of the cycloheptatriene core in hexa(methoxycarbonyl)cycloheptatriene

  • Dmitry N. Platonov,
  • Alexander Yu. Belyy,
  • Rinat F. Salikov,
  • Kirill S. Erokhin and
  • Yury V. Tomilov

Beilstein J. Org. Chem. 2026, 22, 64–70, doi:10.3762/bjoc.22.2

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  • contraposes the expected and the unexpected in terms of polarity in either reactions or synthetic strategies (Figure 1). Most effective reactions within this concept involve the in situ generation of a species exhibiting reversed polarity and the original group is reestablished at later reaction stages [2
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Published 05 Jan 2026

Synthesis and applications of alkenyl chlorides (vinyl chlorides): a review

  • Daniel S. Müller

Beilstein J. Org. Chem. 2026, 22, 1–63, doi:10.3762/bjoc.22.1

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  • HIV-1 non-nucleoside reverse transcriptase inhibitor, they aimed to improve the preparation of compound 19, whose yield had previously been limited to 22% following a similar route. They noticed that in situ-generated species such as POCl3 or HCl triggered ring opening of dichloride 15 to produce a
  • reaction in which an in situ-generated Vilsmeier reagent converted aryl ketones bearing electron-donating substituents at the ortho- or para-position into alkenyl chlorides [68]. The reported yields corresponded to crude products and therefore do not reflect isolated yields of pure compounds (Scheme 15
  • is generated in situ and likely present only in trace amounts. All our attempts to accelerate the reaction through addition of various mono- and bidentate phosphorus ligands were unsuccessful. A similar trend was observed with NEt3, which afforded optimal yields at 20–30 mol % loading (not shown
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Published 02 Jan 2026

One-pot synthesis of ethylmaltol from maltol

  • Immanuel Plangger,
  • Marcel Jenny,
  • Gregor Plangger and
  • Thomas Magauer

Beilstein J. Org. Chem. 2025, 21, 2755–2760, doi:10.3762/bjoc.21.212

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  • amounts of sodium hydride and n-butyllithium followed by trapping with methyl iodide afforded mostly recovered maltol (2, 75%) along with traces of desired ethylmaltol (1, Table 1, entry 1). We attributed the low conversion rate to the poor solubility of the in situ-generated sodium maltolate and instead
  • procedure, maltol (2) was deprotonated with sodium hydride followed by treatment with TBSCl to in situ obtain silyl ether 8e, which was subsequently deprotonated with LiHMDS and C-methylated with methyl iodide at 0 °C. Addition of aqueous hydrochloric acid enabled silyl deprotection to ethylmaltol (1) in 52
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Published 29 Dec 2025

Tandem hydrothiocyanation/cyclization of CF3-iminopropargyl alcohols with NaSCN in the presence of AcOH

  • Ruslan S. Shulgin,
  • Ol’ga G. Volostnykh,
  • Anton V. Stepanov,
  • Igor’ A. Ushakov,
  • Alexander V. Vashchenko and
  • Olesya A. Shemyakina

Beilstein J. Org. Chem. 2025, 21, 2694–2702, doi:10.3762/bjoc.21.207

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  • hydrothiocyanation of ynones using KSCN in AcOH at 70 °C. They also demonstrated that the adducts of ynones are readily cyclized in situ via a second thiocyanation to form thiazine-2-thiones at a slightly higher temperature and for a longer time. Meanwhile the reaction with ynamides led to decyanative amido
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Published 16 Dec 2025

Recent advancements in the synthesis of Veratrum alkaloids

  • Morwenna Mögel,
  • David Berger and
  • Philipp Heretsch

Beilstein J. Org. Chem. 2025, 21, 2657–2693, doi:10.3762/bjoc.21.206

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  • , vinylogous Mannich reaction of the in situ-generated aldimine condensation product of 49 and amine 50 with trimethylsiloxyfuran 51 generated secondary amine 52 in a diastereomeric ratio of 10:1. To close the piperidine, which is to become the F-ring, six steps were carried out: 1,4-reduction of the
  • to abstract the chloride of the [Rh(cod)Cl]2 catalyst, forming a cationic rhodium complex in situ, while diethyl fumarate acted as a hydrogen acceptor. Double bond isomerization, ketone reduction and deprotection of 73 furnished veratramine (13). This Diels–Alder strategy concluded the synthesis of
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Published 10 Dec 2025
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