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Search for "intermolecular" in Full Text gives 804 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Unsymmetrical sulfoxides with sterically hindered catechol fragment: synthesis, structure, electrochemical properties, and antiradical activity

  • Daria A. Burmistrova,
  • Vasiliy A. Fokin,
  • Oleg P. Demidov,
  • Mikhail A. Kiskin,
  • Maxim V. Arsenyev,
  • Andrey I. Poddel’sky,
  • Nadezhda T. Berberova and
  • Ivan V. Smolyaninov

Beilstein J. Org. Chem. 2026, 22, 828–837, doi:10.3762/bjoc.22.65

Graphical Abstract
  • reaction products ranges from 42 to 89%. The crystal structures of catechol sulfoxides with isopropyl, cyclopentyl, adamantyl, benzyl and 1-naphthyl moieties were established by single-crystal X-ray analysis. The possibility of forming intra- and intermolecular hydrogen bonds has been shown for these
  • presence of the readily oxidizable catechol core. The presence of a redox-active catechol moiety adjacent to the sulfoxide group can significantly influence the formation of intra- and intermolecular hydrogen bonds and affect the O–H bond dissociation energy, which in turn may substantially impact the
  • °, depending on the nature of the substituent. The hydroxy group at the second position participates in the formation of an intramolecular H-bond with the oxygen atom of the sulfoxide group (Figure 1), and the second OH group forms an intermolecular contact with the SO group of the neighboring molecule (Table
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Published 01 Jun 2026

Rongalite addition to dienones: diastereoselectivity in cyclic sulfone synthesis; stereochemical rationalization and prospects as a general conjugate nucleophile

  • Melina Goga,
  • Hao Zong,
  • James Franco,
  • Jazmine Prana,
  • Rudolph Michel,
  • Antonia Muro,
  • Elana Rubin,
  • Janet Brenya,
  • Henk Eshuis and
  • Magnus W. P. Bebbington

Beilstein J. Org. Chem. 2026, 22, 742–752, doi:10.3762/bjoc.22.56

Graphical Abstract
  • used to rationalize the diastereoselectivity of the reaction by transition-state modeling, and showcases the conformational subtleties of sulfur-containing rings. Extension of the original reaction to double intermolecular additions is also demonstrated along with a comparative study of Rongalite with
  • demonstrates the general viability of sulfinate addition to produce C-tertiary sulfones, but also implies steric limits to these processes in double intermolecular conjugate addition with Rongalite as the nucleophile. Our approach was to use competition experiments to indicate the relative reactivity of
  • oxygen, which is absent in the other sulfinates. We finally elected to examine double intermolecular conjugate addition with some commercially available enones (Scheme 7). These reactions were sluggish, but yielded the expected adducts 30, 32, and 34 as 1:1 diastereomeric mixtures (30 was obtained in a 1
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Published 13 May 2026

Synthesis of heterocycles based on azomethine ylides from α-amino acids (or amines) and carbonyl compounds

  • Ekaterina V. Berezhnaya,
  • Alexander I. Ponyaev,
  • Vitali M. Boitsov and
  • Alexander V. Stepakov

Beilstein J. Org. Chem. 2026, 22, 705–741, doi:10.3762/bjoc.22.55

Graphical Abstract
  • containing cyclic succinimide, pyrrolidine, pyrrolizidine, and chroman moieties [73] (Scheme 30). The authors showed that the first stage involves intermolecular 1,3-dipolar cycloaddition of azomethine ylides obtained as a result of the interaction of aromatic aldehydes 67 and glycine methyl ester (62) to N
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Published 13 May 2026

Computational prediction of C–H hydricities and their use in predicting the regioselectivity of electron-rich C–H functionalisation reactions

  • Rasmus M. Borup,
  • Nicolai Ree and
  • Jan H. Jensen

Beilstein J. Org. Chem. 2026, 22, 603–610, doi:10.3762/bjoc.22.46

Graphical Abstract
  • descriptor rather than a mechanistic assignment. The results are shown in Figure 5. Compound 1 He et al. [38] reported a dirhodium(II)-catalysed intermolecular C–H insertion into securinenine (compound 1) to generate a C–C bond. The reaction occurs at the site with the lowest predicted hydricity, but only
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Published 17 Apr 2026

Synthesis and anti-cancer activity of naphthalimide–organylselanyl conjugates

  • Rajkumar Ravi and
  • Selvakumar Karuthapandi

Beilstein J. Org. Chem. 2026, 22, 416–435, doi:10.3762/bjoc.22.29

Graphical Abstract
  • geometry around the selenium atom. The structure reveals the four distinct intermolecular interactions that facilitate the self-assembly in the crystal packing. The first is a chalcogen bonding interaction (Se···Se) [53], as shown in Figure 2b, in which one aryl selenide molecule linearly connects to
  • ···C distance of 3.588 Å. Third and fourth, as shown in Supporting Information File 1, Figure S20, the intermolecular interaction of C–H···O, having an H···O distance of 2.544 Å and the (π···π) interaction having a C···C distance of 3.376 Å, stabilise and glue the self-assembled architecture in the
  • % probability, b) and c) show Se···Se and Se···C intermolecular interaction in compound. DFT optimised structure of compounds a) 7 and b) 8. HOMO, LUMO, and the energy gap of the compounds: a) 7 and b) 8. Mulliken atomic charge of the compounds: a) 7 and b) 8. MEP analysis of the compounds: a) 7 and b) 8. log
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Published 09 Mar 2026

Cone p-aminocalix[4]arenes enriched with ‘clickable’ alkyne or azide functionalities

  • Ilia Korniltsev,
  • Vasily Bazhenov,
  • Alexander Gorbunov,
  • Dmitry Cheshkov,
  • Stanislav Bezzubov,
  • Vladimir Kovalev and
  • Ivan Vatsouro

Beilstein J. Org. Chem. 2026, 22, 399–415, doi:10.3762/bjoc.22.28

Graphical Abstract
  • bonds. However, the effect of adding this polar solvent turned out to be too strong, and the resulting spectrum only contained signals from the tetraurea monomer 47, indicating the disruption of intermolecular hydrogen bonds between the urea moieties as well. Still, it was discovered by chance that
  • the other hand, this water content is apparently sufficient to disrupt weaker intermolecular contacts involving triazole heterocycles as hydrogen-bond acceptors. Since the structures of the above mentioned non-capsular aggregate(s) formed by calixarene 47 cannot be drawn based on the available data
  • concentrations of dissolved compounds was too low for NMR analysis. Thus, additional experiments need to be designed to reveal whether the triazolated tetraureacalix[4]arenes can be used to include pairs of triazole-bound cations into supramolecules via intermolecular hydrogen bonding between the urea groups
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Published 09 Mar 2026

Electrosynthetic access to unsymmetrical oxaza[8]helicenes with high chiral stability and strong circularly polarized luminescence (CPL)

  • Tin Zar Aye,
  • Rubal Sharma,
  • Muthu Karuppasamy,
  • Daiya Suzuki,
  • Haruka Nakajima,
  • Yoshitane Imai,
  • Mitsuhiro Arisawa,
  • Mohamed S. H. Salem and
  • Shinobu Takizawa

Beilstein J. Org. Chem. 2026, 22, 372–382, doi:10.3762/bjoc.22.25

Graphical Abstract
  • frontier orbitals, intermolecular interactions, and excited-state dynamics, frequently enhancing fluorescence efficiency and circularly polarized luminescence (CPL) [16][17][18][19][20][21][22]. Consequently, heterohelicenes have emerged as attractive platforms for optoelectronic devices, 3D displays
  • , enabling regioselective intermolecular coupling with 4. While a Scholl-type coupling-first scenario cannot be ruled out, the computed acidity of [3]·+ (pKa ≈ −5.2) together with the more spin-density localization in Int-I supports a deprotonation-first, neutral-radical pathway, consistent with related
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Published 25 Feb 2026

Recent advances in the cleavage of non-activated amides

  • Eun-Sol Choi and
  • Hyo-Jun Lee

Beilstein J. Org. Chem. 2026, 22, 352–369, doi:10.3762/bjoc.22.23

Graphical Abstract
  • . Its characteristic hydrogen-bonding ability strongly influences molecular conformation and intermolecular interactions, while the exceptional thermodynamic stability of the amide moiety contributes to its persistence in diverse atmospheric and biological environments [1][2][3][4][5]. Owing to these
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Published 19 Feb 2026

Spirobarbiturates with a pyrrolizidine moiety: synthesis, structure and biological evaluation

  • Arthur A. Puzyrkov,
  • Andrew S. Drachuk,
  • Ekaterina A. Popova,
  • Alexander V. Stepakov and
  • Vitali M. Boitsov

Beilstein J. Org. Chem. 2026, 22, 274–288, doi:10.3762/bjoc.22.20

Graphical Abstract
  • ]. In 2018, Kota and Sreevani prepared spirobarbiturates via a Mo(CO)6-catalyzed intermolecular [2 + 2 + 2] cycloaddition of propargyl halides with dipropargylbarbituric acid [24]. Almeida and colleagues described the formation of spiroindoline barbiturates via thermal rearrangement of 2,1-benzisoxazole
  • barbiturate moieties of paired enantiomers (see Supporting Information File 1, Tables S2 and S3). The Hirshfeld surface (HS) analysis provides a robust tool for visualizing and characterizing intermolecular interactions in organic crystal lattices. The calculations of the HS were performed using
  • CrystalExplorer 21.5 [55]. On the Hirshfeld surface, color coding indicates the nature of intermolecular interactions: red highlights contacts shorter than the van der Waals radius, white represents distances equal to the van der Waals radius, and blue denotes contacts longer that the van der Waals radius. Figure
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Published 17 Feb 2026

Arene activation via π-bond localization: concepts and opportunities

  • Paul Meiners,
  • Julian J. Melder and
  • Tobias Morack

Beilstein J. Org. Chem. 2026, 22, 257–273, doi:10.3762/bjoc.22.19

Graphical Abstract
  • undergoes selective nucleophilic attack by malonates. Both intra- and intermolecular versions of this reaction have been reported [91][92][93][94]. Notably, this three-component approach has recently been rendered enantioselective for the first time, marking a pivotal advance toward the construction of
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Published 09 Feb 2026

Conformational analysis of difluoromethylornithine: factors influencing its gas-phase and bioactive conformations

  • Matheus P. Freitas

Beilstein J. Org. Chem. 2026, 22, 237–243, doi:10.3762/bjoc.22.17

Graphical Abstract
  • intermolecular interactions in biological environments. This study clarifies the electronic origin of DFMO’s gauche effect and provides insight into how local electronic factors determine the structure of fluorinated amino acid derivatives. Keywords: conformational analysis; difluoromethylornithine; gauche
  • intrinsic stereoelectronic preferences but also by intermolecular interactions within the ornithine decarboxylase active site. Therefore, the conformational behavior of DFMO arises from a delicate balance between the fluorine gauche effect and the intermolecular interactions that stabilize the ligand–enzyme
  • changes in DFMO [11], a systematic evaluation of its zwitterionic and non-zwitterionic forms in the gas phase, aqueous solution, and biological environments is necessary to disentangle the respective contributions of intra- and intermolecular interactions to its conformation and biological activity. In
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Published 05 Feb 2026

Configuration–packing synergy enabling integrated crystalline-state RTP and amorphous-state TADF

  • Ruiyan Wang and
  • Yunan Wu

Beilstein J. Org. Chem. 2026, 22, 224–236, doi:10.3762/bjoc.22.16

Graphical Abstract
  • states, intermolecular interactions enhance spin–orbit coupling and crystallinity suppresses nonradiative decay, thereby activating RTP. This work achieves an integrated “crystalline-state RTP–amorphous-state TADF” regulation within a single molecule. Keywords: imide; π–π stacking; room-temperature
  • of both intra- and intermolecular non-radiative decay pathways [20][21][22]. Several strategies have been developed to enhance RTP in organic materials, such as incorporating functional groups with n→π* characteristics, such as carbonyl [23], sulfone [24], or sulfonamide groups [25], constructing
  • intermolecular coupling to enhance SOC and suppress non-radiative decay channels, while TADF relies more on donor–acceptor decoupling and smaller ΔEST to lower the thermal activation barrier for RISC. Thus, a key challenge in the field is how to establish adjustable synergy between the molecular-scale
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Published 02 Feb 2026

Highly electrophilic, gem- and spiro-activated trichloromethylnitrocyclopropanes: synthesis and structure

  • Ilia A. Pilipenko,
  • Mikhail V. Grigoriev,
  • Olga Yu. Ozerova,
  • Igor A. Litvinov,
  • Darya V. Spiridonova,
  • Aleksander V. Vasilyev and
  • Sergey V. Makarenko

Beilstein J. Org. Chem. 2026, 22, 123–130, doi:10.3762/bjoc.22.5

Graphical Abstract
  • geometry of the molecules and the intermolecular interactions in the crystals was carried out using the PLATON program [50] and the drawings of the molecules were performed using the MERCURY [51] programs. The non-hydrogen atoms were refined in anisotropic approximation. The hydrogen atoms were placed in
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Published 14 Jan 2026

Advances in Zr-mediated radical transformations and applications to total synthesis

  • Hiroshige Ogawa and
  • Hugh Nakamura

Beilstein J. Org. Chem. 2026, 22, 71–87, doi:10.3762/bjoc.22.3

Graphical Abstract
  • alkyl iodide 10 were subjected to nickel catalysis in the presence of zirconocene dichloride and zinc dust, intermolecular coupling occurred to afford ketone 12 in good yields. This reaction was applicable to substrates bearing β-alkoxy substituents, which are typically problematic under anionic
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Published 05 Jan 2026

Reactivity umpolung of the cycloheptatriene core in hexa(methoxycarbonyl)cycloheptatriene

  • Dmitry N. Platonov,
  • Alexander Yu. Belyy,
  • Rinat F. Salikov,
  • Kirill S. Erokhin and
  • Yury V. Tomilov

Beilstein J. Org. Chem. 2026, 22, 64–70, doi:10.3762/bjoc.22.2

Graphical Abstract
  • -group elimination but through intermolecular hydride-transfer reactions as well. Therefore, the expected strategy to establish a chemical bond with a cycloheptatriene core is a reaction of a tropylium ion derivative with a nucleophile. Such reactions may involve either carbon [9][10][11] or heteroatom
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Published 05 Jan 2026

Sustainable electrochemical synthesis of aliphatic nitro-NNO-azoxy compounds employing ammonium dinitramide and their in vitro evaluation as potential nitric oxide donors and fungicides

  • Alexander S. Budnikov,
  • Nikita E. Leonov,
  • Michael S. Klenov,
  • Andrey A. Kulikov,
  • Igor B. Krylov,
  • Timofey A. Kudryashev,
  • Aleksandr M. Churakov,
  • Alexander O. Terent’ev and
  • Vladimir A. Tartakovsky

Beilstein J. Org. Chem. 2025, 21, 2739–2754, doi:10.3762/bjoc.21.211

Graphical Abstract
  • approaches focus mainly on intramolecular radical cyclizations [42][54][55][56][57][58][59][60][61][62][63], while intermolecular [1][64][65][66][67][68] N–N coupling remains a poorly studied area. In addition to the preparation of azo compounds [69][70], intermolecular N–N coupling reactions are of
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Published 29 Dec 2025

Competitive cyclization of ethyl trifluoroacetoacetate and methyl ketones with 1,3-diamino-2-propanol into hydrogenated oxazolo- and pyrimido-condensed pyridones

  • Svetlana O. Kushch,
  • Marina V. Goryaeva,
  • Yanina V. Burgart,
  • Marina A. Ezhikova,
  • Mikhail I. Kodess,
  • Pavel A. Slepukhin,
  • Alexandrina S. Volobueva,
  • Vladimir V. Zarubaev and
  • Victor I. Saloutin

Beilstein J. Org. Chem. 2025, 21, 2716–2729, doi:10.3762/bjoc.21.209

Graphical Abstract
  • the OH group. The crystal packing of single crystals 4att, 4atc, 4acc, 4act, 4dct is ordered by intermolecular hydrogen bonds linking O–H groups and heteroatoms O/N of neighboring molecules (see Table S8 in Supporting Information File 1); N–H groups of the hexahydropyrimidine ring and a carbonyl
  • hexahydrooxazolopyridone 5ctt is ordered by intermolecular hydrogen bonds of the NH2 group with the hydroxy and carbonyl functions of two other molecules (Figure 3b). The OH substituent of the piperidone ring is in the trans-configuration relative to O(4) atom. In the oxazolidine ring, the CH2NH2 group occupies a pseudo
  • -equatorial position and is in the trans-position toward the Bu group. The single crystal structure of the bicycle 5ctc is ordered by intermolecular hydrogen bonds between the hydroxy group and the amino group as well as between the amino group and fluorine of the CF3 substituent of the neighboring molecule
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Published 17 Dec 2025

Recent advancements in the synthesis of Veratrum alkaloids

  • Morwenna Mögel,
  • David Berger and
  • Philipp Heretsch

Beilstein J. Org. Chem. 2025, 21, 2657–2693, doi:10.3762/bjoc.21.206

Graphical Abstract
  • -sensitive hemiketal motif. The synthetic plan was to carve out the superfluous hydroxymethyl group in the late stage of the synthesis using a stereoretentive decarboxylative hydroxylation procedure [48]. A key step in the synthesis was an intermolecular Diels–Alder reaction between diene 97 and dienophile
  • olefination to construct diene 97 for the Diels–Alder reaction. Dienophile 98 was constructed using a Horner–Wadsworth–Emmons (HWE) reaction between aldehyde 103 (2 steps from butenediol) and phosphonate 104 (1 step from commercially available materials). The intermolecular Diels–Alder reaction was achieved
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Published 10 Dec 2025

Thiazolidinones: novel insights from microwave synthesis, computational studies, and potentially bioactive hybrids

  • Luan A. Martinho,
  • Victor H. J. G. Praciano,
  • Guilherme D. R. Matos,
  • Claudia C. Gatto and
  • Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2025, 21, 2618–2636, doi:10.3762/bjoc.21.203

Graphical Abstract
  • system with two molecules in the asymmetric unit. The bond distances in 3n C1=O1 is 1.229(4) Å and C2=S2 is 1.629(4) Å. For compound 4n, the observed C=O bond length is shorter than that of compound 3n (1.202(2) and 1.221(2) Å), respectively (Supporting Information File 1, Table S3). Intermolecular
  • : a) 1H NMR spectra (600 MHz, DMSO-d6) with expansions, and b) 13C NMR spectra (151 MHz, DMSO-d6) with expansions. a) Molecular structure of 3n with crystallographic labeling (50% probability displacement). b) Perspective views of intermolecular hydrogen bonds (dotted lines) of 3n. (‘) symmetry
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Published 28 Nov 2025

Recent advances in total synthesis of illisimonin A

  • Juan Huang and
  • Ming Yang

Beilstein J. Org. Chem. 2025, 21, 2571–2583, doi:10.3762/bjoc.21.199

Graphical Abstract
  • rearrangement. Finally, a White–Chen C–H oxidation [33][34][35] was employed to install the lactone ring, thereby completing the synthesis. The synthesis began with commercially available compound 19 and known compound 20 (Scheme 2). These were joined via an intermolecular aldol reaction to give adduct 21
  • of 85 with iodine and BnOH enabled the intermolecular iodoetherification to yield ketal 86. A KF-promoted intramolecular alkylation of the cyclopentadiene moiety then delivered compound 87. To introduce the C4 hydroxy group and C1 functional handle for further elaboration, a nitroso-Diels–Alder
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Published 20 Nov 2025

Total syntheses of highly oxidative Ryania diterpenoids facilitated by innovations in synthetic strategies

  • Zhi-Qi Cao,
  • Jin-Bao Qiao and
  • Yu-Ming Zhao

Beilstein J. Org. Chem. 2025, 21, 2553–2570, doi:10.3762/bjoc.21.198

Graphical Abstract
  • is as follows: Starting from the chiral compound (S)-carvone, four simple transformations yield the enone intermediate 11. This intermediate undergoes an intermolecular [4 + 2] cycloaddition with diene 12, generating two sets of regioselective products in an approximate ratio of 1:1. The product with
  • hemiacetalization to construct the oxa[3.2.1]-bridged ring system, thereby forming the D and E rings. Subsequently, the introduction of a tertiary hydroxy thiocarbonate at C11 afforded compound 38. Under thermal conditions, 38 underwent smooth introduction of an allyl fragment via intermolecular radical addition
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Published 19 Nov 2025

Effect of a photoswitchable rotaxane on membrane permeabilization across lipid compositions

  • Udyogi N. K. Conthagamage,
  • Lilia Lopez,
  • Zuliah A. Abdulsalam and
  • Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2498–2512, doi:10.3762/bjoc.21.192

Graphical Abstract
  • structure, and saturation, can result in different membrane mechanics, hydration, thickness, intermolecular spacing, and non-covalent interactions with the rotaxane. For example, EYPC bilayer thickness increases linearly with cholesterol concentration and can induce the formation of nanodomains [16]. Such
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Published 11 Nov 2025

Assembly strategy for thieno[3,2-b]thiophenes via a disulfide intermediate derived from 3-nitrothiophene-2,5-dicarboxylate

  • Roman A. Irgashev

Beilstein J. Org. Chem. 2025, 21, 2489–2497, doi:10.3762/bjoc.21.191

Graphical Abstract
  • ) derivatives are a valuable class of fused heteroaromatic compounds characterized by rigid planar π-conjugated backbones that provide narrow band gaps, high charge carrier mobility, and intermolecular π–π stacking interactions, making them particularly attractive for the design of organic materials. Indeed
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Published 11 Nov 2025

Rotaxanes with integrated photoswitches: design principles, functional behavior, and emerging applications

  • Jullyane Emi Matsushima,
  • Khushbu,
  • Zuliah Abdulsalam,
  • Udyogi Navodya Kulathilaka Conthagamage and
  • Víctor García-López

Beilstein J. Org. Chem. 2025, 21, 2345–2366, doi:10.3762/bjoc.21.179

Graphical Abstract
  • for precise control over their structural, dynamic, and functional properties. By harnessing light as a non-invasive stimulus with high spatial and temporal resolution, these photoswitches allow for the modulation of the rotaxanes’ intra- and intermolecular interactions, optoelectronic properties, and
  • intermolecular interactions is a powerful strategy for designing sophisticated molecular systems that operate across multiple length scales, from nanoscale dynamics to macroscopic functions [1][2][3]. Light is particularly attractive compared to other stimuli due to its non-invasive nature, high spatial and
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Published 31 Oct 2025

Comparative analysis of complanadine A total syntheses

  • Reem Al-Ahmad and
  • Mingji Dai

Beilstein J. Org. Chem. 2025, 21, 2334–2344, doi:10.3762/bjoc.21.178

Graphical Abstract
  • produce 11, which could be further converted to 12 and 13 for an intermolecular Mannich-type dimerization to form the C2–C3’ linkage [13]. Further oxidation state adjustment would give complanadines A, B, D, and E. Since their isolation, the complanadines, especially complanadine A, have attracted a
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Published 30 Oct 2025
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