6’-Fluoro[4.3.0]bicyclo nucleic acid: synthesis, biophysical properties and molecular dynamics simulations

• Sibylle Frei,
• Andrei Istrate and
• Christian J. Leumann

Beilstein J. Org. Chem. 2018, 14, 3088–3097, doi:10.3762/bjoc.14.288

• unsaturated 6’-fluoro[4.3.0]bicyclo nucleotides (6’F-bc4,3-DNA). Two 6’F-bc4,3 phosphoramidite building blocks (T and C) were synthesized starting from a previously described [3.3.0]bicyclic sugar. The conversion of this sugar to a gem-difluorinated tricyclic intermediate via difluorocarbene addition followed

• duplexes. Results and Discussion Synthesis of the phosphoramidite building blocks Our strategy for the construction of the two phosphoramidite building blocks 10 and 16 envisaged as a key step the formation of a [4.3.0]bicyclic fluoroenone from a tricyclic siloxydifluorocyclopropane through a ring

• enlargement via selective cyclopropane ring opening [46][47][48][49]. Consequently, the synthesis started from the previously described bicyclic silyl enol ethers 1α/β (Scheme 1) [50][51]. The two anomers of 1 were individually transformed into the trimethylsilyl (TMS)-protected sugars 2α/β by adapting and

Ring-opening metathesis of some strained bicyclic systems; stereocontrolled access to diolefinated saturated heterocycles with multiple stereogenic centers

• Zsanett Benke,
• Melinda Nonn,
• Márton Kardos,
• Santos Fustero and
• Loránd Kiss

Beilstein J. Org. Chem. 2018, 14, 2698–2707, doi:10.3762/bjoc.14.247

• Orgánica, Facultad de Farmàcia, Universidad de Valencia, Av. Vicente Andrés Estellés, s/n 46100 Valencia, Spain 10.3762/bjoc.14.247 Abstract Ring-opening metathesis (ROM) of various unsaturated, constrained bicyclic ring systems has been investigated with the use of commercial ruthenium-based catalysts

• . Starting from various cyclodienes, the corresponding derived bicyclic lactone, lactam, and isoxazoline derivatives were submitted to ROM under ethenolysis. These functionalized, strained bicyclic systems afforded novel highly-functionalized diolefinated heterocyclic scaffolds in ROM reactions with

• structurally restricted cycloalkene β-amino acids or unsaturated bicyclic β-lactams, followed by cross-coupling metathesis (CM) of the newly created C–C double bonds (Scheme 1). Our current goal was to expand the study of the ROM protocol of functionalized strained ring systems to the investigation of

Synthesis of cis-hydrindan-2,4-diones bearing an all-carbon quaternary center by a Danheiser annulation

• Gisela V. Saborit,
• Carlos Cativiela,
• Ana I. Jiménez,
• Josep Bonjoch and
• Ben Bradshaw

Beilstein J. Org. Chem. 2018, 14, 2597–2601, doi:10.3762/bjoc.14.237

• ), CSIC-Universidad de Zaragoza, 50009 Zaragoza, Spain 10.3762/bjoc.14.237 Abstract A straightforward synthetic entry to functionalized hydrindane compounds based on a rapid assembly of the core nucleus by a Danheiser cycloaddition is reported. Valuable bicyclic building blocks containing the fused five

• have been used to build the hydrindane bicyclic system, but incorporating a different functionalization pattern in the cyclic compounds. Proposed here is a new methodological approach to functionalized 3a-substituted hydrindane synthesis based on a Danheiser annulation involving a [3 + 2] cycloaddition

• assemble the 6,5-bicyclic nucleus of hydrindane compounds, expanding the usefulness of the versatile decahydroquinoline building block 1. Although the compounds were prepared in racemic form, optically active substances are also accessible from enantiopure 1 [23]. The overall sequence shows the potential

Synthesis of eunicellane-type bicycles embedding a 1,3-cyclohexadiene moiety

• Alex Frichert,
• Peter G. Jones and
• Thomas Lindel

Beilstein J. Org. Chem. 2018, 14, 2461–2467, doi:10.3762/bjoc.14.222

• an [8.4.0] bicyclic skeleton (1, Figure 1). In many cases, an additional oxygen bridge is present between positions 4 and 7, or 2 and 9, but there are also interesting eunicellanes without oxygen bridge, the majority of which has been isolated from marine corals. These comprise the solenopodins A–D

• of bicyclic diterpenoids sharing the eunicellane skeleton. Closure of the ten-membered ring by pinacol cyclization proved to be possible, if the six-membered ring is either aromatic or a 1,3-cyclohexadiene, but failed for systems with two sp3 centers as bridgeheads. The ten-membered ring of benzene

• beginning, and of precursors in which one of the centers will be sp2- and the other sp3-hybridized. Examples of the latter have already been obtained in form of allenes 32 and 34 that will now have to be elaborated further. Bicyclic eunicellane-type diterpenes. Synthetic eunicellane-type compounds with

Microfluidic light-driven synthesis of tetracyclic molecular architectures

• Javier Mateos,
• Nicholas Meneghini,
• Marcella Bonchio,
• Nadia Marino,
• Tommaso Carofiglio,
• Xavier Companyó and
• Luca Dell’Amico

Beilstein J. Org. Chem. 2018, 14, 2418–2424, doi:10.3762/bjoc.14.219

• manipulation involved the treatment of 4a with PhMgBr, converting the lactone moiety into the corresponding aromatic ketone. Product 8a formed in 71% yield without diastereoisomeric loss. Finally, LiAlH4 reduction of 4a furnished the bicyclic 1,3-diol 9a in quantitative yield, again without the need of

Non-metal-templated approaches to bis(borane) derivatives of macrocyclic dibridgehead diphosphines via alkene metathesis

• Tobias Fiedler,
• Michał Barbasiewicz,
• Michael Stollenz and
• John A. Gladysz

Beilstein J. Org. Chem. 2018, 14, 2354–2365, doi:10.3762/bjoc.14.211

• first metathesis step does not require a syn relationship (per VIII), the same possibility can be entertained for the second (see IX). This would lead to an isomeric bicyclic compound with "crossed chains". We have sought to access such species by conducting metatheses of substrates of the types in

Hydroarylations by cobalt-catalyzed C–H activation

• Rajagopal Santhoshkumar and
• Chien-Hong Cheng

Beilstein J. Org. Chem. 2018, 14, 2266–2288, doi:10.3762/bjoc.14.202

• and co-workers developed a cobalt-catalyzed hydroarylation of 2-vinyloxiranes with indoles 7 to form C2-allylated products 46, albeit in low stereoselectivity (Scheme 29b) [83]. Similarly, Cheng et al. reported a hydroarylation reaction of arenes 7 with a bicyclic alkene to form ring-opening products

• form bicyclic cobaltacycle H1. After the reversible coordination of arene 55 with H1 to generate intermediate H2, ortho C–H cobaltation provides complex H3, which changed into product 56 and Co(I) catalyst by reductive elimination of H3. 5. Hydroarylation of C=X (X = N, O) bonds 5.1 Low-valent cobalt

Selective formation of a zwitterion adduct and bicarbonate salt in the efficient CO₂ fixation by N-benzyl cyclic guanidine under dry and wet conditions

• Yoshiaki Yoshida,
• Naoto Aoyagi and
• Takeshi Endo

Beilstein J. Org. Chem. 2018, 14, 2204–2211, doi:10.3762/bjoc.14.194

• particular, CO2 capture–release behaviors of bicyclic and six-membered cyclic amidine derivatives have been well studied compared to that of five-membered derivatives, because the high ring strain of five-membered cyclic amidine derivatives was unfavorable for the binding between CO2 and the amidine moiety

• guanidine derivative and CO2 was isolated and characterized for the first time, although there were a few reports about the bicyclic guanidine derivatives such as TBD. Results and Discussion CO2 fixation behavior of N-benzyl cyclic guanidine depending on dry and wet conditions First, CO2 fixation by N

An amphiphilic pseudo[1]catenane: neutral guest-induced clouding point change

• Tomoki Ogoshi,
• Tomohiro Akutsu and
• Tada-aki Yamagishi

Beilstein J. Org. Chem. 2018, 14, 1937–1943, doi:10.3762/bjoc.14.167

• /hydrophilic ratio in a molecule largely affects its assembled properties in aqueous media. In this study, we synthesized a new bicyclic compound which could dynamically change its hydrophobic/hydrophilic ratio by chemical stimulus. The bicyclic compound consisted of amphiphilic pillar[5]arene and hydrophobic

• alkyl chain rings, and formed a self-inclusion structure in aqueous media, which was assigned as a pseudo[1]catenane structure. The hydrophobic chain ring was hidden inside the pillar[5]arene cavity in the pseudo[1]catenane structure, thus the bicyclic compound was soluble in water at 20 °C with a

• aggregation of the hydrophobic alkyl chain rings, which induced insolubilization of the bicyclic compound in aqueous media at 20 °C and a decrease in its clouding point. Keywords: amphiphilic molecules; host–guest complexes; lower critical solution temperature; pillar[n]arenes; pseudo[1]catenane

Synthesis of new tricyclic 5,6-dihydro-4H-benzo[b][1,2,4]triazolo[1,5-d][1,4]diazepine derivatives by [3⁺ + 2]-cycloaddition/rearrangement reactions

• Lin-bo Luan,
• Zi-jie Song,
• Zhi-ming Li and
• Quan-rui Wang

Beilstein J. Org. Chem. 2018, 14, 1826–1833, doi:10.3762/bjoc.14.155

• , we wish to describe the synthesis of unprecedented tricyclic heterocycles, i.e., 5,6-dihydro-4H-benzo[b][1,2,4]triazolo[1,5-d][1,4]diazepinium salts 10 and the related neutral free base derivatives 13 via the cationic [3+ + 2]-cycloaddition/rearrangement reactions using the bicyclic 4-acetoxy-4-azo

Synthesis of spirocyclic scaffolds using hypervalent iodine reagents

• Fateh V. Singh,
• Priyanka B. Kole,
• Saeesh R. Mangaonkar and
• Samata E. Shetgaonkar

Beilstein J. Org. Chem. 2018, 14, 1778–1805, doi:10.3762/bjoc.14.152

• of DMAP base. The spirocyclization reactions were performed in MeOH for 2 h at 0 °C and spirocyclic products 56 were isolated in good yields (Scheme 18). Additionally, fused bicyclic compounds 57 were also observed in few reactions in traces. The structure of the spiro β-lactam was confirmed by

Glycosylation reactions mediated by hypervalent iodine: application to the synthesis of nucleosides and carbohydrates

• Yuichi Yoshimura,
• Hideaki Wakamatsu,
• Yoshihiro Natori,
• Yukako Saito and
• Noriaki Minakawa

Beilstein J. Org. Chem. 2018, 14, 1595–1618, doi:10.3762/bjoc.14.137

• -thiosugar derivatives. We thus developed the first synthetic route accessing the 4-thiosugar derivative by way of bicyclic intermediate 8 from diacetoneglucose (5). Construction of the bicyclic ring of 8 was achieved by consecutive inter-/intramolecular SN2 reactions of the dimesylate derivative 7 obtained

Two new 2-alkylquinolones, inhibitory to the fish skin ulcer pathogen Tenacibaculum maritimum, produced by a rhizobacterium of the genus Burkholderia sp.

• Dandan Li,
• Naoya Oku,
• Atsumi Hasada,
• Masafumi Shimizu and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2018, 14, 1446–1451, doi:10.3762/bjoc.14.122

• correspond to two rings, which constitutes a fused bicyclic structure as suggested by the number of available aromatic carbons (eleven). A 4-quinolone substructure was indicated by a peak-splitting at the 340–320 nm region in the UV spectrum (328 and 322 nm) [13]. Indeed, 1H NMR resonances at the down field

Recent applications of chiral calixarenes in asymmetric catalysis

• Mustafa Durmaz,
• Erkan Halay and
• Selahattin Bozkurt

Beilstein J. Org. Chem. 2018, 14, 1389–1412, doi:10.3762/bjoc.14.117

• coligand, their uranyl-(salen) derivatives 106a,b have been employed as models of the oxo-Mn(V)–(salen) oxidant species. The reactions were highly efficient in terms of productivity (up to 96% yield) and enantioselectivity (up to 93% ee) when rigid bicyclic alkenes such as 1,2-dihydronaphthalene and

[3 + 2]-Cycloaddition reaction of sydnones with alkynes

• Veronika Hladíková,
• Jiří Váňa and
• Jiří Hanusek

Beilstein J. Org. Chem. 2018, 14, 1317–1348, doi:10.3762/bjoc.14.113

• bicyclic intermediate via a concerted [3 + 2]-cycloaddition followed by its very fast decomposition (extrusion of CO2) via a retro-Diels–Alder [4 + 2]-cycloaddition. The almost spontaneous extrusion of CO2 is caused by an energetically favorable aromatization occurring in this step leading to the formation

• (80 °C) caused a decrease in the total yield by approximately 50%, with slightly increased selectivity (from 4.96 to 6.56). Lowering of the yield with increasing pressure confirms the reversibility of the first step (see Scheme 5) because of retardation of CO2 cleavage from the bicyclic intermediate

• . Such reversibility was also suggested by Harrity et al. [92] on the basis of quantum calculations. While the formation of the bicyclic intermediate was calculated to be only slightly exergonic (−3.3 kcal·mol−1) the overall reaction is highly exothermic (−108.2 kcal·mol−1). These results show that minor

Synthesis of pyrazolopyrimidinones using a “one-pot” approach under microwave irradiation

• Mark Kelada,
• John M. D. Walsh,
• Robert W. Devine,
• Patrick McArdle and
• John C. Stephens

Beilstein J. Org. Chem. 2018, 14, 1222–1228, doi:10.3762/bjoc.14.104

• . Herein, we report such a strategy for the simple synthesis of functionalized pyrazolo[1,5-a]pyrimidinones that employs a one-pot microwave-assisted approach. Findings A number of synthetic approaches have been developed for the synthesis of privileged nitrogen-fused bicyclic systems such as the pyrazolo

• the development of novel biologically active compounds based on the pyrazolopyrimidinone scaffold, we sought to develop a simple one-pot synthesis of the nitrogen-fused bicyclic system. In order to establish reaction conditions for this one-pot synthesis, we began by seeking general reaction

One hundred years of benzotropone chemistry

• Arif Dastan,
• Haydar Kilic and
• Nurullah Saracoglu

Beilstein J. Org. Chem. 2018, 14, 1120–1180, doi:10.3762/bjoc.14.98

• .Et2O in MeOH gave the expected dithioketal 154, whereas the reaction of tropone under similar conditions presented complications from rapid [1][7] sigmatropic shifts of unhindered alkylthio groups to give bicyclic 1,7-disubstituted cycloheptatrienes like 156 (Scheme 27). Leitich’s group reported the

• underwent di-π-methane photo-rearrangement to 210–212 exclusively (Scheme 35). Moreover, Dastan’s group prepared bicyclic endoperoxide 213 in 74% yield from 2,3-benzotropone (12) via tetraphenylporphyrine (TPP)-sensitized photo-oxygenation (Scheme 35) [149]. 3.2.4. Miscellaneous transformations: Machiguchi

• -benzotropone (12) was also performed (Scheme 36). This condensation followed by incipient oxidation gave the quinone 223 (15%), the bridged bicyclic product 224 (7%), and 225 (28%) [152]. 4. Chemistry of 3,4-benzotropone (13) 4.1. Generation, characterization, and reaction 3,4-Benzotropone (13) is of

Preparation, structure, and reactivity of bicyclic benziodazole: a new hypervalent iodine heterocycle

• Akira Yoshimura,
• Michael T. Shea,
• Cody L. Makitalo,
• Melissa E. Jarvi,
• Gregory T. Rohde,
• Akio Saito,
• Mekhman S. Yusubov and
• Viktor V. Zhdankin

Beilstein J. Org. Chem. 2018, 14, 1016–1020, doi:10.3762/bjoc.14.87

• , Duluth, MN 55811, USA, Division of Applied Chemistry, Institute of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan 10.3762/bjoc.14.87 Abstract A new bicyclic organohypervalent iodine heterocycle derivative of benziodazole was prepared by

• preparation of several bicyclic benziodoxoles 3 starting from 2-iodoisophthalic acid (2, Scheme 1b). These bicyclic benziodoxoles 3 can be used as efficient coupling reagents for the direct condensation reaction between carboxylic acids and alcohols or amines to provide esters, macrocyclic lactones, or amides

• knowledge, all known benziodazoles have a mono-heterocyclic structure, and bi-heterocyclic benziodazole derivatives similar to the bicyclic benziodoxole 3 have never been reported. In this paper, we report the synthesis, structural characterization, and reactivity of a novel bicyclic benziodazole derivative

An efficient and facile access to highly functionalized pyrrole derivatives

• Meng Gao,
• Wenting Zhao,
• Hongyi Zhao,
• Ziyun Lin,
• Dongfeng Zhang and
• Haihong Huang

Beilstein J. Org. Chem. 2018, 14, 884–890, doi:10.3762/bjoc.14.75

• decomposition pathways, we increased the amount of 9a up to 1.5 equivalents, which delivered the bicyclic pyrrolidine 11a in excellent yield (82%, Table 2, entry 5). Prolonging the reaction time from 3 h to 6 h had no influence on the yield (Table 2, entry 6), which demonstrated that appropriate increase on the

Diastereoselective auxiliary- and catalyst-controlled intramolecular aza-Michael reaction for the elaboration of enantioenriched 3-substituted isoindolinones. Application to the synthesis of a new pazinaclone analogue

• Romain Sallio,
• Stéphane Lebrun,
• Frédéric Capet,
• Francine Agbossou-Niedercorn,
• Christophe Michon and
• Eric Deniau

Beilstein J. Org. Chem. 2018, 14, 593–602, doi:10.3762/bjoc.14.46

• -transfer catalyst; 3-substituted isoindolinones; Introduction Isoindolinones I (Figure 1), e.g., 2,3-dihydro-1H-isoindol-1-ones, also called phthalimidines are bicyclic lactams whose molecular structure is the basis of a wide range of alkaloids and biologically active compounds [1][2][3][4][5][6][7][8][9

• -substituted isoindolinones 1 and 2 could be obtained in high enantioselectivities from the intermediates (2R,3S)-3–5 after removal of the chiral auxiliary (Scheme 1). (2R,3S)-bicyclic lactams 3–5 could be prepared by the asymmetric intramolecular organo-catalyzed aza-Michael reaction of (R)-benzamides 6–8

Synthesis and biological evaluation of RGD and isoDGR peptidomimetic-α-amanitin conjugates for tumor-targeting

• Lizeth Bodero,
• Paula López Rivas,
• Barbara Korsak,
• Torsten Hechler,
• Andreas Pahl,
• Christoph Müller,
• Daniela Arosio,
• Luca Pignataro,
• Cesare Gennari and
• Umberto Piarulli

Beilstein J. Org. Chem. 2018, 14, 407–415, doi:10.3762/bjoc.14.29

• bicyclic octapeptide toxin belonging to the amatoxin family, found in Amanita Phalloides (death cap mushroom), see Figure 1 [1]. Its mechanism of action consists in the inhibition of cellular transcription by an effective blocking of RNA polymerase II, which is present in the nuclei of eukaryotic cells and

Novel amide-functionalized chloramphenicol base bifunctional organocatalysts for enantioselective alcoholysis of meso-cyclic anhydrides

• Lingjun Xu,
• Shuwen Han,
• Linjie Yan,
• Haifeng Wang,
• Haihui Peng and
• Fener Chen

Beilstein J. Org. Chem. 2018, 14, 309–317, doi:10.3762/bjoc.14.19

• conveniently converted into the corresponding monoester products in high yields and enantioselectivities. Notably, bicyclic anhydrides (Table 2, entries 1 and 2) and tricyclic anhydrides (Table 2, entries 3 and 4) were more reactive than mono-cyclic anhydrides (Table 2, entries 5–12). In the case of mono

Fluorogenic PNA probes

• Tirayut Vilaivan

Beilstein J. Org. Chem. 2018, 14, 253–281, doi:10.3762/bjoc.14.17

• applications, it means that tC–PNA alone is not useful as a fluorogenic probe. The related tri- or bicyclic thymine analogues tT and bT (without the additional aromatic ring) pair specifically with dA when incorporated into aegPNA, but their fluorescence properties have not been reported [184]. PNA carrying

5-Aminopyrazole as precursor in design and synthesis of fused pyrazoloazines

• Ranjana Aggarwal and
• Suresh Kumar

Beilstein J. Org. Chem. 2018, 14, 203–242, doi:10.3762/bjoc.14.15

Transition-metal-free [3 + 3] annulation of indol-2-ylmethyl carbanions to nitroarenes. A novel synthesis of indolo[3,2-b]quinolines (quindolines)

• Michał Nowacki and
• Krzysztof Wojciechowski

Beilstein J. Org. Chem. 2018, 14, 194–202, doi:10.3762/bjoc.14.14

• unprotected indoloquinoline 12 and its N-oxide 13 in 26 and 12% yields, respectively (Scheme 4). To extend the scope of the reaction to more active nitroarenes, we used slightly modified reaction conditions using DBU as a base. Earlier we have found that in the reactions of bicyclic nitroarenes this base was