Nucleophile-induced ring contraction in pyrrolo[2,1-c][1,4]benzothiazines: access to pyrrolo[2,1-b][1,3]benzothiazoles

• Ekaterina A. Lystsova,
• Maksim V. Dmitriev,
• Andrey N. Maslivets and
• Ekaterina E. Khramtsova

Beilstein J. Org. Chem. 2023, 19, 646–657, doi:10.3762/bjoc.19.46

• products 6a,b,e were formed (Scheme 10). These observations are in a full accordance with the studies of similar products of 5-oxa-FPDs II [33][53][54]. We assume compounds 5 to be products of the kinetic control of the reaction, and compounds 3, of the thermodynamic one. In addition, the formation of

C3-Alkylation of furfural derivatives by continuous flow homogeneous catalysis

• Grédy Kiala Kinkutu,
• Catherine Louis,
• Myriam Roy,
• Juliette Blanchard and
• Julie Oble

Beilstein J. Org. Chem. 2023, 19, 582–592, doi:10.3762/bjoc.19.43

• (triethoxysilyl)ethyl)phosphine L1 or triphenylphosphine [40][41][42]. Their synthesis, well-described in the literature, is detailed in Supporting Information File 1 (pp. S3–S6). Moreover, a kinetic study carried out in batch in the presence of the [Ru3(CO)11(L1)] (comp1), [Ru3(CO)10(L1)2] (comp2) or [Ru3(CO)9

• Information File 1 for the reaction kinetic curves of catalysts). In addition, the catalyst with a single L1 ligand (comp1) was found to be more reactive than the one with two ligands (comp2), and was therefore selected for further optimization. In contrast, comparison of its reaction kinetic curve with that

A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• chirality which exhibits no racemization under action of strong bases [29]. The chiral N–H-containing rimantadine-based ligand (L6) is highly lipophilic and it was successfully used for the kinetic resolution of unprotected racemic amino acids [30]. The examples mentioned above show that the metal–Schiff

• level of stereoselectivity induction is important for the evaluation of the chiral templates efficiency. The estimation of the thermodynamically and kinetically controlled stereoselectivity is based on different approaches. The diastereomeric ratio of the products formed under kinetic control is related

• fragment in the oxidized (GlyNi)L7 and (ΔAlaNi)L7 complexes bears a certain spin density (as it has been previously shown for the t-Bu-free analogs [31]), the bulky t-Bu substituent does prevent dimerization of the radical cations formed in the electron-transfer step increasing their kinetic stability

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• than the possible syn-1,4-substituted product. It was found the reductive elimination transition state leading to the 1,4-disubstituted product TS33-P1 would require an increase in distortion energy compared to TS35-P2 which contributes to an overall greater kinetic barrier. The following year, Lautens

Dipeptide analogues of fluorinated aminophosphonic acid sodium salts as moderate competitive inhibitors of cathepsin C

• Karolina Wątroba,
• Małgorzata Pawełczak and
• Marcin Kaźmierczak

Beilstein J. Org. Chem. 2023, 19, 434–439, doi:10.3762/bjoc.19.33

• fluorinated aminophosphonates [23][24] with the simultaneous deprotection of the amino group. The free amines were subjected to kinetic studies to investigate their interaction with cathepsin C. The required steps should be simple and fast, and the conditions of the reactions should be as mild as possible

• literature data of the starting esters 5 and 7 literature data [23][24]. A very good correlation of chemical shifts was also observed in the 13C NMR spectra for the key signals from the C1 and C2 atoms (Table 1). Each sample was pure; no byproducts were present. Kinetic studies Due to the homology and

• fluorinated aminophosphonates with the simultaneous deprotection of the amino group. The resulting acids were converted into the corresponding salts. All the reactions proceeded quantitatively. Obtained compounds were subjected to kinetic studies against cathepsin C, and the results indicated that they are

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• excellent yields using Zn(OAc)2 in a CHCl3/MeOH mixture. Their UV–vis titration study revealed that these host systems exhibit strong anion-binding affinities. Furthermore, with the help of kinetic studies, the absorption efficiency of malachite green dye was investigated by using free-base porphyrins 171a

Group 13 exchange and transborylation in catalysis

• Dominic R. Willcox and
• Stephen P. Thomas

Beilstein J. Org. Chem. 2023, 19, 325–348, doi:10.3762/bjoc.19.28

• kinetic and computational analyses, the B‒C(sp2)/B‒H transborylation transition state was determined to have a free energy barrier of approximately 20 kcal mol−1 (ΔG‡calc = 19.7 kcal mol−1; ΔG‡exp = 20.3 kcal mol−1) (Scheme 2). The borane-catalysed hydroboration of alkenes has been less explored, with

• an ambiphilic aluminium precatalyst, (Me2N)C6H4AlMe2, Thomas et al. were able to shut down hydroalumination by the alane and catalyse the C–H borylation of terminal alkynes with HBpin (Scheme 21) [96]. Through kinetic analysis, it was found that the rate of the alkynyl-Bpin product formation was

• fastest during catalyst activation, rather than during catalysis, leading to an in-depth investigation of catalyst activation using variable time normalisation analysis (VTNA) and kinetic isotope effects. A catalytic cycle was proposed in which (Me2N)C6H4AlH2 83 underwent deprotonation of the alkyne 1 to

Recommendations for performing measurements of apparent equilibrium constants of enzyme-catalyzed reactions and for reporting the results of these measurements

• Robert N. Goldberg,
• Robert T. Giessmann,
• Peter J. Halling,
• Carsten Kettner and
• Hans V. Westerhoff

Beilstein J. Org. Chem. 2023, 19, 303–316, doi:10.3762/bjoc.19.26

• the apparent equilibrium constant K′ and the standard transformed molar Gibbs energy of reaction (ΔrG'°) for biochemical reactions [11]. STRENDA does not aim at policing authors who report data on enzyme kinetic or on equilibrium measurements. The aim is to aid these researchers by providing

• is convenient to perform (e.g., continuous spectroscopic monitoring), it requires a substantial amount of additional effort by the investigator. We note that it is not necessary to know the mechanism or the kinetic constants or the rate of approach to equilibrium to obtain an accurate value of K

• constants and certain enzyme kinetics parameters via the Haldane relationships. These relationships are discussed in references [10][36] and, in fact, values of K′ have been obtained for a fair number of enzyme-catalyzed reactions by measuring rates of reaction and obtaining the enzyme kinetic parameters

Investigation of cationic ring-opening polymerization of 2-oxazolines in the “green” solvent dihydrolevoglucosenone

• Solomiia Borova and
• Robert Luxenhofer

Beilstein J. Org. Chem. 2023, 19, 217–230, doi:10.3762/bjoc.19.21

• kinetic study of the polymerization was monitored by 1H NMR spectroscopy analysis. NMR spectra were recorded on a Fourier 300 spectrometer (1H; 300.12 MHz and 13C (1H); 75.48 MHz; Bruker Biospin; Rheinstetten, Germany) at a temperature of 298 K and evaluated using the MestReNova V.6.0.2.-5475 software

• the dependence of monomer concentration M on t is expected in the case of the living polymerization. The decreases compared with MeOTf at the same temperature. The data obtained from these kinetic investigations are summarized in Table 1. After examining the 1H NMR spectra collected during the

• polymerization at 90 °C. The initial monomer concentration was kept at 3 M and [M]0/[I]0 was kept at 50 for the initial kinetic investigation. The monomer conversion was followed by 1H NMR spectroscopy and plotted in the common semi-logarithmic kinetic plots (Figure 2). For the majority of initiators, the

Total synthesis of insect sex pheromones: recent improvements based on iron-mediated cross-coupling chemistry

• Eric Gayon,
• Guillaume Lefèvre,
• Olivier Guerret,
• Adrien Tintar and
• Pablo Chourreu

Beilstein J. Org. Chem. 2023, 19, 158–166, doi:10.3762/bjoc.19.15

• ligand to the iron center in alkyl–alkenyl cross-coupling reactions featuring Grignard reagents, but was involved in the formation of the bulky dication [Mg(NMP)6]2+, the presence of the latter contributing to the kinetic stabilization of the on-cycle active species [Me3FeII]− (Table 2, entry 1) [35

Insight into oral amphiphilic cyclodextrin nanoparticles for colorectal cancer: comprehensive mathematical model of drug release kinetic studies and antitumoral efficacy in 3D spheroid colon tumors

• Sedat Ünal,
• Gamze Varan,
• Juan M. Benito,
• Yeşim Aktaş and
• Erem Bilensoy

Beilstein J. Org. Chem. 2023, 19, 139–157, doi:10.3762/bjoc.19.14

• mathematically by release kinetic modeling for the first time. The overall findings indicated that the strategy of orally targeting anticancer drugs such as CPT with positively charged poly-β-CD-C6 nanoparticles to colon tumors for local and/or systemic efficacy is a promising approach. Keywords: colorectal

• -parenteral route. In this context, release kinetic modeling studies and 3D cell culture studies of colon carcinoma cells of mice and human origin were carried out for the first time for CPT-loaded positively charged β-CD nanoparticles with different formulations. A positive surface charge was achieved

• assessments of this topic [9]. Release kinetics study The in vitro release profiles of CPT-loaded amphiphilic cyclodextrin nanoparticles were fitted with a variety of kinetic models, and the release mechanisms, which are illuminating markers for novel drug delivery systems, were mathematically investigated

Catalytic aza-Nazarov cyclization reactions to access α-methylene-γ-lactam heterocycles

• Bilge Banu Yagci,
• Selin Ezgi Donmez,
• Onur Şahin and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2023, 19, 66–77, doi:10.3762/bjoc.19.6

• acetal group could be used as substrates in an aza-Nazarov cyclization with the intermediacy of in situ-generated N-acyliminium ions (Scheme 1b) [21]. The first catalytic aza-Nazarov reaction was reported by Tius and co-workers in 2010, which involved the kinetic resolution of azirine derivatives via an

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• kinetic resolution of racemic alcohols [99] and for the oxidation of benzylic cyclic ethers to lactones [100] was demonstrated. The CuI/9-azabicyclo[3.3.1]nonane N-oxyl (ABNO) catalytic system successfully promotes the oxidative coupling of alcohols with primary amines [101] (Scheme 13). The reaction

Naphthalimide-phenothiazine dyads: effect of conformational flexibility and matching of the energy of the charge-transfer state and the localized triplet excited state on the thermally activated delayed fluorescence

• Kaiyue Ye,
• Liyuan Cao,
• Davita M. E. van Raamsdonk,
• Zhijia Wang,
• Jianzhang Zhao,
• Daniel Escudero and
• Denis Jacquemin

Beilstein J. Org. Chem. 2022, 18, 1435–1453, doi:10.3762/bjoc.18.149

• recorded on a LP920 laser flash photolysis spectrometer (Edinburgh Instruments, Ltd., U.K.). The data (kinetic decay traces and the transient difference absorption spectra) were analyzed with the L900 software. All samples were deaerated with N2 for ca. 15 min in collinear configuration of the pump and

Mechanochemical synthesis of unsymmetrical salens for the preparation of Co–salen complexes and their evaluation as catalysts for the synthesis of α-aryloxy alcohols via asymmetric phenolic kinetic resolution of terminal epoxides

• Shengli Zuo,
• Shuxiang Zheng,
• Jianjun Liu and
• Ang Zuo

Beilstein J. Org. Chem. 2022, 18, 1416–1423, doi:10.3762/bjoc.18.147

• the unsymmetrical salens with zinc, copper, and cobalt was studied and the chiral Co–salen complex 2f was obtained in 98% yield. Hydrolytic kinetic resolution (HKR) of epichlorohydrin with water catalyzed by complex 2f (0.5 mol %) was explored and resulted in 98% ee, suggesting complex 2f could serve

• with regard to conformational differences, for instance, oligosalen [14], macrocyclic oligosalen [15], and polymeric salen [16]. Jacobsen and co-workers reported the first synthesis of α-aryloxy alcohols through the phenolic kinetic resolution (KR) of terminal epoxides using a Co–salen catalyst [17

• were explored as well. Furthermore, we present the hydrolytic kinetic resolution (HKR) of epichlorohydrin with water using Co–salen complexes 2, and α-aryloxy alcohols were synthesized by the 2f catalytic system through the asymmetric ring opening of epichlorohydrin and phenols. Results and Discussion

On drug discovery against infectious diseases and academic medicinal chemistry contributions

• Yves L. Janin

Beilstein J. Org. Chem. 2022, 18, 1355–1378, doi:10.3762/bjoc.18.141

• miniaturization to undertake fast screening campaigns of very large chemical libraries using targets and/or phenotypic-based assays. – The development of structural sciences providing very precise ideas on the kinetic, thermodynamic or on the mode of interactions of chemicals with their biochemical targets. Which

Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies

• Attila Palágyi,
• Jindřich Jindřich,
• Juraj Dian and
• Sophie Fourmentin

Beilstein J. Org. Chem. 2022, 18, 1346–1354, doi:10.3762/bjoc.18.140

• stability towards hydrolysis. Kinetic studies of the imine hydrolysis by NMR For the kinetic studies of the hydrolysis of imino-CDs, we selected the pro-fragrance 3d made from the most common aldehyde – benzaldehyde. The release of the benzaldehyde (2d) was studied by 1H NMR spectroscopy. Aqueous 0.1 M

• that CD-based pro-fragrances combine a chemical barrier, as the aldehydes are linked to the CD via imine bond, and a physicochemical (supramolecular) barrier, as we established that aldehydes formed inclusion complexes in aqueous solution with β-CD. We confirmed from the NMR kinetic study of the imine

• 1H, 150.04 MHz for 13C) and Varian UNITYINOVA 400 (399,95 MHz for 1H and 100,58 MHz for 13C) spectrometers. For the kinetic studies, the 1H NMR spectra were acquired on a Varian VNMRS 300 spectrometer (300 MHz for 1H). DMSO-d6 and D2O were used as the solvents. The chemical shift values (δ) are given

Make or break: the thermodynamic equilibrium of polyphosphate kinase-catalysed reactions

• Michael Keppler,
• Sandra Moser,
• Henning J. Jessen,
• Christoph Held and
• Jennifer N. Andexer

Beilstein J. Org. Chem. 2022, 18, 1278–1288, doi:10.3762/bjoc.18.134

• concentrations of substrate, the different kinetic preferences of PPK1 and PPK2 can be observed. The implications of these results for the application of PPKs in chemical synthesis and as enzymes for ATP regeneration systems are discussed. Keywords: ATP regeneration; biocatalyst; ePC-SAFT; polyp; PPK

• substrate bonds (Figure 2e) [17]. Apart from the structures, the kinetic preference of either polyP synthesis (NTP usage) or NTP synthesis (polyP degradation) has been described to be a characteristic feature of PPK1 and PPK2(-I), respectively (Figure 2a). This is supported by analysis of the kinetic

• cholerae is very similar to the one from E. coli with 82% similarity (64% identity) on the amino acid level; however, it was described to show kinetic preferences of a PPK2 [20]. While the PPK2 from P. aeruginosa catalyses both synthesis and usage of ATP with kinetic preference for ATP synthesis, the

Ferrocenoyl-adenines: substituent effects on regioselective acylation

• Mateja Toma,
• Gabrijel Zubčić,
• Jasmina Lapić,
• Senka Djaković,
• Davor Šakić and
• Valerije Vrček

Beilstein J. Org. Chem. 2022, 18, 1270–1277, doi:10.3762/bjoc.18.133

• kinetic and thermodynamic control of the acylation reaction. Results and Discussion It was shown that the reaction between the pyrimidine anion (uracil, thymine, or 5-fluorouracil) and FcCOCl in N,N-dimethylformamide (DMF) proceeded in a full regiospecific mode [19]. In the purine series, however, the

Enantioselective total synthesis of putative dihydrorosefuran, a monoterpene with an unique 2,5-dihydrofuran structure

• Irene Torres-García,
• Josefa L. López-Martínez,
• Rocío López-Domene,
• Manuel Muñoz-Dorado,
• Ignacio Rodríguez-García and
• Miriam Álvarez-Corral

Beilstein J. Org. Chem. 2022, 18, 1264–1269, doi:10.3762/bjoc.18.132

• stereoselective kinetic resolution of allenol 3 via lipase AK-catalyzed acetylation [15]. In this way, unaltered, (−)-hydroxyallene 3 could be separated from (+)-acetyl derivative 9 through standard column chromatography (Scheme 3). Enantiomeric excesses of (−)-3 and (+)-9 were determined by chiral HPLC analyses

Experimental and theoretical studies on the synthesis of 1,4,5-trisubstituted pyrrolidine-2,3-diones

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Nguyen Ngoc Tri,
• Luc Van Meervelt,
• Nguyen Tien Trung and
• Wim Dehaen

Beilstein J. Org. Chem. 2022, 18, 1140–1153, doi:10.3762/bjoc.18.118

• proposed based on computational results and the main product is formed favorably following the PES via the lowest ΔG# pathway in both the gas-phase and an ethanol solvent model. DFT calculations showed that kinetic selectivity is more significant than thermodynamic selectivity for forming main products

• , the reaction pathway starting from 4a through IS3 and finally yielding 10ab-v2 is a more favorable one in both thermodynamic (ΔG) and kinetic (ΔG#) aspects (red and black lines) in comparision with going through IS5 to achieve the 10ab product. For the reaction originating from 4a’, passing through

• IS5 and finally forming product 10ab is the most preferred pathway, and even more favorable than both directions from 4a to yield 10ab-v2. Hence, the reaction routes to obtain 10ab-v2 are thermodynamically favorable, while yielding 10ab is under kinetic control. In order to better evaluate the

Understanding the competing pathways leading to hydropyrene and isoelisabethatriene

• Shani Zev,
• Marion Ringel,
• Ronja Driller,
• Bernhard Loll,
• Thomas Brück and
• Dan T. Major

Beilstein J. Org. Chem. 2022, 18, 972–978, doi:10.3762/bjoc.18.97

• . We show that there is a great thermodynamic preference for hydropyrene and hydropyrenol formation, and hence most likely in the synthesis of the isoelisabethatriene products kinetic control is at play. Keywords: diterpenes; enzyme mechanism; quantum mechanics; terpene synthases; thermodynamic and

• kinetic control; Introduction Terpenes constitute a ubiquitous class of natural molecules that are synthesized by terpene synthases (TPS). TPS generate a plethora of terpenes employing rich carbocation chemistry from a very limited number of substrates, known as geranyl pyrophosphate (GPP), farnesyl

• on the mechanistic details of the HP and IE pathways using computational methods in the gas phase. Gas-phase studies have been crucial in understanding terpene chemistry [10][11][12][13][14][15][16][17][18][19][20][21][22]. This work sheds light on the thermodynamic and kinetic parameters of the

Synthesis of bis-spirocyclic derivatives of 3-azabicyclo[3.1.0]hexane via cyclopropene cycloadditions to the stable azomethine ylide derived from Ruhemann's purple

• Alexander S. Filatov,
• Olesya V. Khoroshilova,
• Anna G. Larina,
• Vitali M. Boitsov and
• Alexander V. Stepakov

Beilstein J. Org. Chem. 2022, 18, 769–780, doi:10.3762/bjoc.18.77

• revealed that the cycloaddition reactions are under kinetic control and belong to the class of inverse electron demand 1,3-DC reactions. We believe that the outcome of this work will serve as a basis for developing synthetic approaches to other bis-spirocyclic derivatives of 3-azabicyclo[3.1.0]hexane via

Structural basis for endoperoxide-forming oxygenases

• Takahiro Mori and
• Ikuro Abe

Beilstein J. Org. Chem. 2022, 18, 707–721, doi:10.3762/bjoc.18.71

• [41][42][43]. Crystal structures of COXs The structural basis for the di-peroxide formation reaction by COXs has been substantially elucidated by electron paramagnetic resonance (EPR), kinetic analysis, X-ray crystallography, and mutagenesis experiments [24][44][45]. The structural analyses of

• . Catalytic residue in the cyclooxygenase reaction The formation of a tyrosyl radical during the catalytic cycle was proved by EPR and kinetic analyses [59][60][61]. Moreover, chemical and molecular biology analyses and a mutagenesis experiment identified the position of the tyrosyl radical. Treatment of the

• , including kinetic, UV–vis absorption, and EPR analyses of FtmOx1 wild type and its Y68F, Y74F, Y140F, and Y224F variants [70]. Their results revealed that the Y68F variant did not accumulate the initial tyrosyl radical and the formation of verruculogen was significantly decreased, while the Y224F variant

Inductive heating and flow chemistry – a perfect synergy of emerging enabling technologies

• Conrad Kuhwald,
• Sibel Türkhan and
• Andreas Kirschning

Beilstein J. Org. Chem. 2022, 18, 688–706, doi:10.3762/bjoc.18.70

• water can be improved by using RF heating (Scheme 6) [43]. Thus, nickel-coated iron carbide NP (FeC-Ni) was developed to drastically reduce the overpotential at 20 mA/cm2 (≈200 mV for OER). This kinetic enhancement corresponds to a temperature increase of 200 °C, although the actual temperature only