Ultrasound-assisted Strecker synthesis of novel 2-(hetero)aryl-2-(arylamino)acetonitrile derivatives

• Emese Gal,
• Luiza Gaina,
• Hermina Petkes,
• Alexandra Pop,
• Castelia Cristea,
• Gabriel Barta,
• Dan Cristian Vodnar and
• Luminiţa Silaghi-Dumitrescu

Beilstein J. Org. Chem. 2020, 16, 2929–2936, doi:10.3762/bjoc.16.242

• ]. A major benefit of sonocrystallization appeared to be the induction of nucleation and therefore, crystallization improvements were operated for several organic compounds of low to medium molecular weight with the possibility of scaling up of this technology for industrial use [7]. Low ultrasonic

• molecules of the synthesized α-(arylamino)acetonitrile derivatives in the aggregated crystalline state, single crystals suitable for X-ray analysis were obtained by crystallization from isopropanol. The crystallographic data for the structure 2a reported in this paper have been deposited at the Cambridge

Changed reactivity of secondary hydroxy groups in C8-modified adenosine – lessons learned from silylation

• Jennifer Frommer and
• Sabine Müller

Beilstein J. Org. Chem. 2020, 16, 2854–2861, doi:10.3762/bjoc.16.234

• functions were removed. We used TEA·3HF in DMF for this purpose, allowing easy purification of the deprotected nucleoside derivative 5 by crystallization from DCM with a yield of 60% over two reaction steps. Next, the 5’-hydroxy group was protected with DMT, and the linker on C8 was introduced by

Synthesis and investigation of quadruplex-DNA-binding, 9-O-substituted berberine derivatives

• Jonas Becher,
• Daria V. Berdnikova,
• Heiko Ihmels and
• Christopher Stremmel

Beilstein J. Org. Chem. 2020, 16, 2795–2806, doi:10.3762/bjoc.16.230

• , CH2Cl2/MeOH 5→10%). After crystallization of the major fraction from MeOH/Et2O 7:3 the desired product was obtained as yellow solid. 9-O-{β-{4'-[(9''-Adenyl)methyl]-1H-1',2',3'-triazol-1'-yl}ethyl}berberine bromide (4a) According to the GP, a solution of 3a (150 mg, 292 µmol), 2 (60.6 mg, 350 µmol

• ), CuSO4 (5.83 mg, 36.5 µmol) and Na-ascorbate (36.3 mg, 183 µmol) was stirred at reflux in THF/H2O/MeCN 2:2:1 (25 mL). After purification by column chromatography (Rf = 0.11; 10% MeOH) and crystallization the product 4a was obtained as orange-colored amorphous solid (30.0 mg, 46.5 µmol, 16%); mp 191–194

• µmol) was stirred at reflux in THF/H2O/MeCN 2:2:1 (25 mL). After purification by column chromatography (Rf = 0.12, 10% MeOH) and crystallization the product 4b was obtained as yellow, amorphous solid (42.3 mg, 64.0 µmol, 26%); mp 189–192 °C (dec.); 1H NMR (600 MHz, DMSO-d6) δ 2.41 (tt, 3J = 7 Hz, 3J

Synthesis of purines and adenines containing the hexafluoroisopropyl group

• Viacheslav Petrov,
• Rebecca J. Dooley,
• Alexander A. Marchione,
• Elizabeth L. Diaz,
• Brittany S. Clem and
• William Marshall

Beilstein J. Org. Chem. 2020, 16, 2739–2748, doi:10.3762/bjoc.16.224

• hexane layer was dried, and the solvent was removed under vacuum to leave 0.6 g of a white solid, which was found to be the 99% pure minor isomer 2b (mp 122–123 °C after the second crystallization from hexane; this sample was used for X-ray diffraction studies). The rest of the reaction mixture was

Anion exchange resins in phosphate form as versatile carriers for the reactions catalyzed by nucleoside phosphorylases

• Julia N. Artsemyeva,
• Ekaterina A. Remeeva,
• Tatiana N. Buravskaya,
• Irina D. Konstantinova,
• Roman S. Esipov,
• Anatoly I. Miroshnikov,
• Natalia M. Litvinko and
• Igor A. Mikhailopulo

Beilstein J. Org. Chem. 2020, 16, 2607–2622, doi:10.3762/bjoc.16.212

• % base → nelarabine conversion. Work-up of reaction mixture and purification/crystallization as described above gave nelarabine in 52% yield (14 mg; 99.0% purity according to HPLC). Synthesis of kinetin riboside Synthesis of α-ᴅ-ribofuranosyl-1-phosphate as barium salt (Rib-1Pi, Ba2+) by phosphorolysis

Comparative ligand structural analytics illustrated on variably glycosylated MUC1 antigen–antibody binding

• Christopher B. Barnett,
• Tharindu Senapathi and
• Kevin J. Naidoo

Beilstein J. Org. Chem. 2020, 16, 2540–2550, doi:10.3762/bjoc.16.206

• the MUC1 VNTR domain. Thus, a synthetic 8-amino acid peptide (APDTRPAP) and the corresponding Tn glycopeptide were synthesized. It was found from the co-crystallization of the AR20.5 antigen-binding fragment (Fab) with the MUC1 peptide and glycopeptide that the glycan moiety of the glycopeptide did

NMR Spectroscopy of supramolecular chemistry on protein surfaces

• Peter Bayer,
• Anja Matena and
• Christine Beuck

Beilstein J. Org. Chem. 2020, 16, 2505–2522, doi:10.3762/bjoc.16.203

• negatively charged patches, depending on the functional groups present. X-ray crystallography is a useful tool to obtain structural information about the binding modes of supramolecular ligands on proteins (reviewed in [76]). However, the crystallization of proteins with supramolecular ligands can be very

• crystallization. Crystallization seems to succeed best for ligands that can adopt a defined conformation upon binding without flexible loops protruding from the protein surface. Even in these cases, the ligand is preferably found at binding sites that are facing solvent channels but at the same time enable

• they have been used to serve as scaffolds for the assembly of protein arrays and crystallization aids [23][24][25][26][27][28]. In addition, a terbiumIII complex termed crystallophore has been developed as a crystallographic nucleation and phasing tool for protein crystallography that can also easily

Clickable azide-functionalized bromoarylaldehydes – synthesis and photophysical characterization

• Dominik Göbel,
• Marius Friedrich,
• Enno Lork and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2020, 16, 1683–1692, doi:10.3762/bjoc.16.139

• non-radiative transitions can be achieved by the host–guest method [50][51][52] or by crystallization [53][54][55][56][57]. In difference to the liquid phase, the highly ordered packing and the restriction of molecular motions in the crystalline state favor a persistent luminescence. The promotion of

Five-component, one-pot synthesis of an electroactive rotaxane comprising a bisferrocene macrocycle

• Natalie Lagesse,
• Luca Pisciottani,
• Maxime Douarre,
• Pascale Godard,
• Brice Kauffmann,
• Vicente Martí-Centelles and
• Nathan D. McClenaghan

Beilstein J. Org. Chem. 2020, 16, 1564–1571, doi:10.3762/bjoc.16.128

• macrocycle–thread hydrogen bonds, with the other two macrocycle amides forming hydrogen bonds with the competitive crystallization solvent DMF. In contrast, rotaxane 1a presented four thread–macrocycle hydrogen bonds (Figure 7 and Table 1). The strength of the hydrogen bonds could be estimated by the donor

One-pot synthesis of 1,3,5-triazine-2,4-dithione derivatives via three-component reactions

• Gui-Feng Kang and
• Gang Zhang

Beilstein J. Org. Chem. 2020, 16, 1447–1455, doi:10.3762/bjoc.16.120

• structure unambiguously, as a representative example, the structure of 6aa was also confirmed by single crystal X-ray diffraction (XRD) studies after crystallization from ethyl acetate/hexane (Figure 2). CCDC 1991859 (for 6aa) contains the supplementary crystallographic data for this paper. These data are

Disposable cartridge concept for the on-demand synthesis of turbo Grignards, Knochel–Hauser amides, and magnesium alkoxides

• Mateo Berton,
• Kevin Sheehan,
• Andrea Adamo and
• D. Tyler McQuade

Beilstein J. Org. Chem. 2020, 16, 1343–1356, doi:10.3762/bjoc.16.115

• optimization (Table S4, Supporting Information File 1), solubility issues hindered the formation of a concentrated solution (>0.8 M). The crystallization of iPrMgBr in the collection flask forced us to reduce the initial concentration of the organic halide to 0.9 M, yielding iPrMgBr (0.75 M, 82%, note: the

• GC–MS, after being washed with pentane at 0 °C and dried under vacuum, showed no evidence of organic compounds. It seemed that TMPMgCl⋅LiCl coordinated less LiCl than the corresponding iPrMgCl⋅LiCl and triggered LiCl crystallization. To solve this issue, the packed-bed column temperature was decrease

Ferrocenyl-substituted tetrahydrothiophenes via formal [3 + 2]-cycloaddition reactions of ferrocenyl thioketones with donor–acceptor cyclopropanes

• Grzegorz Mlostoń,
• Mateusz Kowalczyk,
• André U. Augustin,
• Peter G. Jones and
• Daniel B. Werz

Beilstein J. Org. Chem. 2020, 16, 1288–1295, doi:10.3762/bjoc.16.109

• the slightly more polar one was isolated and identified as the minor isomer of 9d. In the course of crystallization from hexane the less polar fraction gave single crystals suitable for the X-ray diffraction analysis, which unambiguously confirmed that in this molecule the Ph(C-5) and Fc(C-2) groups

• dichloromethane as the eluent. Analytically pure samples of tetrahydrothiophenes 9 were obtained by crystallization from petroleum ether or hexane with a small amount of dichloromethane. The diastereoselectivity of the studied reactions was determined by integration of the crude 1H NMR. Preliminary purification

Development of fluorinated benzils and bisbenzils as room-temperature phosphorescent molecules

• Shigeyuki Yamada,
• Takuya Higashida,
• Yizhou Wang,
• Masato Morita,
• Takuya Hosokai,
• Kaveendra Maduwantha,
• Kaveenga Rasika Koswattage and
• Tsutomu Konno

Beilstein J. Org. Chem. 2020, 16, 1154–1162, doi:10.3762/bjoc.16.102

• efforts, several molecular designs have been proposed as alternatives, particularly the use of pure organic phosphorescent molecules [22]. For example, methyl 4-bromobenzoate (Figure 1B) exhibits phosphorescence in the crystalline state via nonradiative ISC to the T1 state owing to crystallization-induced

Synthesis and properties of quinazoline-based versatile exciplex-forming compounds

• Rasa Keruckiene,
• Simona Vekteryte,
• Ervinas Urbonas,
• Matas Guzauskas,
• Eigirdas Skuodis,
• Dmytro Volyniuk and
• Juozas V. Grazulevicius

Beilstein J. Org. Chem. 2020, 16, 1142–1153, doi:10.3762/bjoc.16.101

• 1, that only showed a crystallization signal (TCR = 138 °C) during the cooling scan. The 10% weight-loss temperature (TD−10%) of the quinazoline-based compounds decreased in the order of 3 (409 °C) > 2 (345 °C) > 1 (247 °C). For compounds 1 and 2 a complete weight loss was observed in the TGA

The charge-assisted hydrogen-bonded organic framework (CAHOF) self-assembled from the conjugated acid of tetrakis(4-aminophenyl)methane and 2,6-naphthalenedisulfonate as a new class of recyclable Brønsted acid catalysts

• Svetlana A. Kuznetsova,
• Alexander S. Gak,
• Yulia V. Nelyubina,
• Vladimir A. Larionov,
• Han Li,
• Michael North,
• Vladimir P. Zhereb,
• Alexander F. Smol'yakov,
• Artem O. Dmitrienko,
• Michael G. Medvedev,
• Igor S. Gerasimov,
• Ashot S. Saghyan and
• Yuri N. Belokon

Beilstein J. Org. Chem. 2020, 16, 1124–1134, doi:10.3762/bjoc.16.99

• before the crystallization, as confirmed by powder diffraction data collected at room temperature for the white precipitate obtained from the mixed water solutions of TAPM and NDS. Space group P21/c, a = 20.9609(10) Å, b = 19.7563(9) Å, c = 22.6642(10) Å, β = 92.694(3)°, cell volume = 9375.1(8) Å3. When

Aryl-substituted acridanes as hosts for TADF-based OLEDs

• Naveen Masimukku,
• Dalius Gudeika,
• Oleksandr Bezvikonnyi,
• Ihor Syvorotka,
• Rasa Keruckiene,
• Dmytro Volyniuk and
• Juozas V. Grazulevicius

Beilstein J. Org. Chem. 2020, 16, 989–1000, doi:10.3762/bjoc.16.88

• transition (Tg) was noticed at 86 °C, followed by an exothermic crystallization (Tcr) signal observed at 183 °C to obtain crystals, which melted at 201 °C. The crystalline sample of derivative 3 demonstrated a similar behavior. It melted upon the first heating at 174 °C and exhibited a glass transition at Tg

• (250 mL) with vigorous stirring. After filtration and crystallization from methanol compound 2 was obtained as white crystals. Yield (0.60 g, 80%); mp 83–84 °C; 1H NMR (400 MHz, CDCl3) δ 7.46 (d, J = 2.3 Hz, 2H), 7.30 (dd, J = 8.7, 2.3 Hz, 2H), 6.84 (d, J = 8.7 Hz, 2H), 3.98 (q, J = 7.0 Hz, 2H), 1.48

Towards triptycene functionalization and triptycene-linked porphyrin arrays

• Gemma M. Locke,
• Keith J. Flanagan and
• Mathias O. Senge

Beilstein J. Org. Chem. 2020, 16, 763–777, doi:10.3762/bjoc.16.70

• Supporting Information File 1). While this feature is an interesting take on the selective homo interactions, the explanation of this motif formation is potentially more mundane in this case. Considering that during the crystallization process, the spontaneous formation of the homo or hetero π-stacking of

Efficient synthesis of dipeptide analogues of α-fluorinated β-aminophosphonates

• Marcin Kaźmierczak and
• Henryk Koroniak

Beilstein J. Org. Chem. 2020, 16, 756–762, doi:10.3762/bjoc.16.69

• at room temperature. What is more, we attempted to crystallize at least one derivative to confirm the absolute stereochemistry of the obtained compounds. In order to obtain a single crystal suitable for X-ray diffraction studies, various crystallization techniques were tested [37][38

• ]. Crystallization of derivative 14c from D2O brought the expected results. The analysis confirmed the structure of the resulting compound 14c. The absolute configuration of 14c is consistent with the stereochemistry we proposed based on NMR studies. The crystals of 14c contained the (1R,2S)-diastereoisomer (Figure

Synthesis of C₇₀-fragment buckybowls bearing alkoxy substituents

• Yumi Yakiyama,
• Shota Hishikawa and
• Hidehiro Sakurai

Beilstein J. Org. Chem. 2020, 16, 681–690, doi:10.3762/bjoc.16.66

• vapour diffusion method using CHCl3/hexane conditions. Figure 2 shows the crystal structure of 5a. The crystal was obtained as a racemic compound containing a pair of two enantiomers defined by bowl chirality [26], as a result of the rapid bowl inversion under the crystallization conditions. 5a formed a

Direct borylation of terrylene and quaterrylene

• Haruka Kano,
• Keiji Uehara,
• Kyohei Matsuo,
• Hironobu Hayashi,
• Hiroko Yamada and
• Naoki Aratani

Beilstein J. Org. Chem. 2020, 16, 621–627, doi:10.3762/bjoc.16.58

• ]. However, the crude product was not completely purified by Soxhlet extraction and by crystallization in our hands. The borylation reaction of hardly soluble crude quaterrylene gave a deep green suspension. MALDI mass spectrometry of the reaction mixture detected an ion peak at m/z = 1004.5018 (calcd for

Photophysics and photochemistry of NIR absorbers derived from cyanines: key to new technologies based on chemistry 4.0

• Bernd Strehmel,
• Christian Schmitz,
• Ceren Kütahya,
• Yulian Pang,
• Anke Drewitz and
• Heinz Mustroph

Beilstein J. Org. Chem. 2020, 16, 415–444, doi:10.3762/bjoc.16.40

• preferably refers to the solubility in the surrounding matrix, while undesirable events such as aggregation are of minor importance. In the worst case, it can also result in crystallization of the cyanine in the matrix under certain storage conditions such as high humidity and/or elevated temperatures

Architecture and synthesis of P,N-heterocyclic phosphine ligands

• Wisdom A. Munzeiwa,
• Bernard Omondi and
• Vincent O. Nyamori

Beilstein J. Org. Chem. 2020, 16, 362–383, doi:10.3762/bjoc.16.35

• . Finally, the desired ligands were obtained by palladium-catalyzed phosphorylation with triphenylphosphine in DMF [92]. Resolution with palladium amine complexes and subsequent crystallization resulted in the enantiomerically pure ligands 95. C2-Symmetric atropisomeric diphosphines are among a diverse

Absolute configurations of talaromycones A and B, α-diversonolic ester, and aspergillusone B from endophytic Talaromyces sp. ECN211

• Ken-ichi Nakashima,
• Junko Tomida,
• Takao Hirai,
• Yoshiaki Kawamura and
• Makoto Inoue

Beilstein J. Org. Chem. 2020, 16, 290–296, doi:10.3762/bjoc.16.28

• absolute configurations of the new derivatives 1 and 2 using extensive spectroscopic analyses as well as single-crystal X-ray diffractometry. Our crystallization efforts resolved the absolute configuration of α-diversonolic ester (3) and its derivatives, which had not been clarified previously

Halogen-bonding-induced diverse aggregation of 4,5-diiodo-1,2,3-triazolium salts with different anions

• Xingyu Xu,
• Shiqing Huang,
• Zengyu Zhang,
• Lei Cao and
• Xiaoyu Yan

Beilstein J. Org. Chem. 2020, 16, 78–87, doi:10.3762/bjoc.16.10

• halogen acceptors was also investigated. Diffusion of ether into the mixture of 4,4'-bipyridine (bpy) and 2-BF4 in dichloromethane leads to the crystallization of 2-BF4·0.5bpy (Figure 8). It crystallizes in the monoclinic space group P21/c. The acceptor 4,4'-bipyridine provides a complementary link for 1D

Photoreversible stretching of a BAPTA chelator marshalling Ca²⁺-binding in aqueous media

• Aurélien Ducrot,
• Arnaud Tron,
• Robin Bofinger,
• Ingrid Sanz Beguer,
• Jean-Luc Pozzo and
• Nathan D. McClenaghan

Beilstein J. Org. Chem. 2019, 15, 2801–2811, doi:10.3762/bjoc.15.273

• with toluene (3 × 100 mL). A final crystallization from EtOH yielded the title compound (4.69 g, 89%). 1H NMR (CDCl3, 200 MHz) δ 7.30–7.42 (m, 10H, CHAr), 6.75 (d, J = 9.2 Hz, 2H, CHAr), 6.43–6.48 (m, 4H, CHAr), 4.97 (s, 4H, CH2), 4.18 (s, 4H, CH2), 4.14 (s, 8H, CH2), 4.06 (q, J = 7.2 Hz, 8H, CH2